Variant report

Variant	rs73752133
Chromosome Location	chr5:14601426-14601427
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11952550	1.00[AMR][1000 genomes]
rs11953822	1.00[AMR][1000 genomes]
rs11956097	1.00[AMR][1000 genomes]
rs16903651	1.00[AMR][1000 genomes]
rs55714227	1.00[AMR][1000 genomes]
rs55957515	1.00[AMR][1000 genomes]
rs56044433	1.00[AMR][1000 genomes]
rs56155042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56297478	1.00[AMR][1000 genomes]
rs56350972	1.00[AMR][1000 genomes]
rs60753214	0.83[AMR][1000 genomes]
rs73749521	1.00[AMR][1000 genomes]
rs73749524	1.00[AMR][1000 genomes]
rs73749525	1.00[AMR][1000 genomes]
rs73749526	1.00[AMR][1000 genomes]
rs73749585	1.00[AMR][1000 genomes]
rs73749586	1.00[AMR][1000 genomes]
rs73749593	1.00[AMR][1000 genomes]
rs73749595	0.83[AMR][1000 genomes]
rs73749596	0.83[AMR][1000 genomes]
rs73752121	0.83[AMR][1000 genomes]
rs73752126	1.00[AMR][1000 genomes]
rs73752131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752135	1.00[AMR][1000 genomes]
rs73752138	1.00[AMR][1000 genomes]
rs73752139	1.00[AMR][1000 genomes]
rs73752140	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710316	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14585800-14605000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:14586000-14602600	Weak transcription	Fetal Intestine Large	intestine
3	chr5:14591800-14610000	Weak transcription	Gastric	stomach
4	chr5:14592000-14618400	Weak transcription	Hela-S3	cervix
5	chr5:14593200-14618400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:14593400-14604800	Weak transcription	Fetal Stomach	stomach
7	chr5:14593600-14615200	Weak transcription	Fetal Brain Female	brain
8	chr5:14594400-14621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:14594800-14602600	Weak transcription	Colonic Mucosa	Colon
10	chr5:14595200-14613400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:14595400-14601600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:14595400-14616200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:14595600-14602600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:14596600-14601600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:14597600-14610400	Weak transcription	Adipose Nuclei	Adipose
16	chr5:14597800-14601600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:14598200-14618200	Weak transcription	Thymus	Thymus
18	chr5:14598400-14602200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:14598400-14604800	Weak transcription	Lung	lung
20	chr5:14598400-14610400	Weak transcription	Spleen	Spleen
21	chr5:14598400-14619400	Weak transcription	Small Intestine	intestine
22	chr5:14598600-14602200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:14598600-14602400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:14598600-14602400	Weak transcription	Fetal Thymus	thymus
25	chr5:14598800-14601600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:14598800-14601600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:14598800-14601800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:14598800-14602200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:14598800-14607000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:14598800-14608200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:14598800-14608400	Weak transcription	Pancreas	Pancrea
32	chr5:14598800-14608800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:14598800-14616600	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:14598800-14617000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr5:14598800-14618000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr5:14599000-14602400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr5:14599000-14616800	Weak transcription	Brain Angular Gyrus	brain
38	chr5:14599400-14610400	Weak transcription	Left Ventricle	heart
39	chr5:14600000-14618000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr5:14600400-14606000	Weak transcription	Fetal Brain Male	brain
41	chr5:14600400-14609000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr5:14600400-14615400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:14600600-14601600	Weak transcription	Primary T cells from cord blood	blood
44	chr5:14600800-14602000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:14601200-14604400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr5:14601200-14618200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr5:14601400-14604800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:14601400-14606000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr5:14601400-14606200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr5:14601400-14606400	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links