Variant report

Variant	rs73752140
Chromosome Location	chr5:14631399-14631400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11952550	1.00[AMR][1000 genomes]
rs11953822	1.00[AMR][1000 genomes]
rs11956097	1.00[AMR][1000 genomes]
rs16903651	1.00[AMR][1000 genomes]
rs55714227	1.00[AMR][1000 genomes]
rs55957515	1.00[AMR][1000 genomes]
rs56044433	1.00[AMR][1000 genomes]
rs56155042	1.00[AMR][1000 genomes]
rs56297478	1.00[AMR][1000 genomes]
rs56350972	1.00[AMR][1000 genomes]
rs60753214	0.83[AMR][1000 genomes]
rs73749521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749524	1.00[AMR][1000 genomes]
rs73749525	1.00[AMR][1000 genomes]
rs73749526	1.00[AMR][1000 genomes]
rs73749585	1.00[AMR][1000 genomes]
rs73749586	1.00[AMR][1000 genomes]
rs73749593	1.00[AMR][1000 genomes]
rs73749595	0.83[AMR][1000 genomes]
rs73749596	0.83[AMR][1000 genomes]
rs73752121	0.83[AMR][1000 genomes]
rs73752126	1.00[AMR][1000 genomes]
rs73752131	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752132	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752133	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710316	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14630200-14631600	Enhancers	Primary neutrophils fromperipheralblood	blood

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