Variant report

Variant	rs73776104
Chromosome Location	chr6:140575347-140575348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55762637	1.00[AFR][1000 genomes]
rs57522160	1.00[AFR][1000 genomes]
rs58550929	1.00[AFR][1000 genomes]
rs73776105	1.00[AFR][1000 genomes]
rs73776108	1.00[AFR][1000 genomes]
rs73776145	1.00[AFR][1000 genomes]
rs73776146	1.00[AFR][1000 genomes]
rs73776148	1.00[AFR][1000 genomes]
rs73776150	1.00[AFR][1000 genomes]
rs73777330	1.00[AFR][1000 genomes]
rs73777465	1.00[AFR][1000 genomes]
rs73777466	1.00[AFR][1000 genomes]
rs73777467	1.00[AFR][1000 genomes]
rs73777468	1.00[AFR][1000 genomes]
rs73777490	1.00[AFR][1000 genomes]
rs73777492	1.00[AFR][1000 genomes]
rs73777497	1.00[AFR][1000 genomes]
rs73777498	1.00[AFR][1000 genomes]
rs73777499	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140570400-140575600	Weak transcription	Placenta	Placenta
2	chr6:140573800-140577600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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