Variant report

Variant	rs73777490
Chromosome Location	chr6:140504602-140504603
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55762637	1.00[AFR][1000 genomes]
rs58550929	1.00[AFR][1000 genomes]
rs73776104	1.00[AFR][1000 genomes]
rs73776105	1.00[AFR][1000 genomes]
rs73776108	1.00[AFR][1000 genomes]
rs73776145	1.00[AFR][1000 genomes]
rs73776146	1.00[AFR][1000 genomes]
rs73776148	1.00[AFR][1000 genomes]
rs73776150	1.00[AFR][1000 genomes]
rs73777465	1.00[AFR][1000 genomes]
rs73777466	1.00[AFR][1000 genomes]
rs73777467	1.00[AFR][1000 genomes]
rs73777468	1.00[AFR][1000 genomes]
rs73777492	1.00[AFR][1000 genomes]
rs73777497	1.00[AFR][1000 genomes]
rs73777498	1.00[AFR][1000 genomes]
rs73777499	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140497000-140516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140500600-140504800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:140500600-140505800	Weak transcription	Ovary	ovary
4	chr6:140501000-140505400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:140503000-140506200	Enhancers	NHDF-Ad	bronchial
6	chr6:140503200-140505800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140504000-140505800	Enhancers	NHLF	lung
8	chr6:140504200-140505200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:140504200-140505800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:140504200-140506000	Enhancers	Osteobl	bone
11	chr6:140504200-140506200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:140504400-140505000	ZNF genes & repeats	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links