Variant report

Variant	rs73776150
Chromosome Location	chr6:140683313-140683314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55762637	1.00[AFR][1000 genomes]
rs57522160	1.00[AFR][1000 genomes]
rs58550929	1.00[AFR][1000 genomes]
rs73776104	1.00[AFR][1000 genomes]
rs73776105	1.00[AFR][1000 genomes]
rs73776108	1.00[AFR][1000 genomes]
rs73776145	1.00[AFR][1000 genomes]
rs73776146	1.00[AFR][1000 genomes]
rs73776148	1.00[AFR][1000 genomes]
rs73777330	1.00[AFR][1000 genomes]
rs73777465	1.00[AFR][1000 genomes]
rs73777466	1.00[AFR][1000 genomes]
rs73777467	1.00[AFR][1000 genomes]
rs73777468	1.00[AFR][1000 genomes]
rs73777490	1.00[AFR][1000 genomes]
rs73777492	1.00[AFR][1000 genomes]
rs73777497	1.00[AFR][1000 genomes]
rs73777498	1.00[AFR][1000 genomes]
rs73777499	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140679000-140683400	Weak transcription	Placenta	Placenta
2	chr6:140681400-140685000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140682000-140685000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:140682200-140683400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:140683000-140683400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links