Variant report
| Variant | rs73777498 |
|---|---|
| Chromosome Location | chr6:140535630-140535631 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:140534052..140535840-chr6:140537958..140540728,3 | K562 | blood: | |
| 2 | chr6:140533963..140536569-chr6:140568826..140570409,2 | K562 | blood: | |
| 3 | chr6:140534009..140535840-chr6:140539228..140542033,2 | K562 | blood: | |
| 4 | chr6:140525648..140527331-chr6:140535285..140538098,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263514 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55762637 | 1.00[AFR][1000 genomes] |
| rs57522160 | 1.00[AFR][1000 genomes] |
| rs58550929 | 1.00[AFR][1000 genomes] |
| rs73776104 | 1.00[AFR][1000 genomes] |
| rs73776105 | 1.00[AFR][1000 genomes] |
| rs73776108 | 1.00[AFR][1000 genomes] |
| rs73776145 | 1.00[AFR][1000 genomes] |
| rs73776146 | 1.00[AFR][1000 genomes] |
| rs73776148 | 1.00[AFR][1000 genomes] |
| rs73776150 | 1.00[AFR][1000 genomes] |
| rs73777330 | 1.00[AFR][1000 genomes] |
| rs73777465 | 1.00[AFR][1000 genomes] |
| rs73777466 | 1.00[AFR][1000 genomes] |
| rs73777467 | 1.00[AFR][1000 genomes] |
| rs73777468 | 1.00[AFR][1000 genomes] |
| rs73777490 | 1.00[AFR][1000 genomes] |
| rs73777492 | 1.00[AFR][1000 genomes] |
| rs73777497 | 1.00[AFR][1000 genomes] |
| rs73777499 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv886693 | chr6:140444057-140578494 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv1825718 | chr6:140476088-140584384 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv5503 | chr6:140511360-140556183 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140531600-140538400 | Weak transcription | NHLF | lung |
