Variant report

Variant	rs73780328
Chromosome Location	chr5:115870370-115870371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17140041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57183792	0.88[EUR][1000 genomes]
rs6885611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6885885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890131	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7734835	0.97[AFR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:115860000-115872200	Enhancers	HepG2	liver
4	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
6	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
7	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
8	chr5:115864800-115872000	Enhancers	Brain Substantia Nigra	brain
9	chr5:115865600-115871600	Weak transcription	Brain Germinal Matrix	brain
10	chr5:115866400-115873200	Enhancers	Fetal Muscle Leg	muscle
11	chr5:115867000-115870600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:115867000-115871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:115867400-115872000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:115867400-115872000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:115867600-115873200	Enhancers	Colon Smooth Muscle	Colon
16	chr5:115867800-115870800	Weak transcription	Lung	lung
17	chr5:115868000-115872800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:115868000-115873200	Enhancers	Stomach Smooth Muscle	stomach
19	chr5:115868200-115872000	Enhancers	Brain Angular Gyrus	brain
20	chr5:115868200-115873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr5:115868400-115871000	Enhancers	Small Intestine	intestine
22	chr5:115868400-115871200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:115868400-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:115868400-115871800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:115868400-115871800	Enhancers	Brain Hippocampus Middle	brain
26	chr5:115868400-115873000	Enhancers	Fetal Lung	lung
27	chr5:115868600-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:115868600-115871800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:115868600-115871800	Enhancers	Brain Cingulate Gyrus	brain
30	chr5:115868600-115876000	Weak transcription	Psoas Muscle	Psoas
31	chr5:115868800-115870800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:115868800-115872200	Weak transcription	Fetal Brain Female	brain
33	chr5:115868800-115872200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:115869000-115871400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr5:115869000-115873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:115869200-115870400	Enhancers	H9 Cell Line	embryonic stem cell
37	chr5:115869200-115870400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:115869200-115872000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:115869200-115873200	Weak transcription	Fetal Heart	heart
40	chr5:115869400-115871000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:115869400-115871000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr5:115869400-115871000	Enhancers	Pancreas	Pancrea
43	chr5:115869400-115871200	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr5:115869600-115870400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:115869600-115871000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:115869600-115871800	Weak transcription	Fetal Stomach	stomach
47	chr5:115869600-115875200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr5:115869800-115870600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:115870000-115870400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr5:115870000-115870800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links