Variant report

Variant	rs6890131
Chromosome Location	chr5:115868242-115868243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17140041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57183792	0.88[EUR][1000 genomes]
rs6885611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6885885	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780324	0.93[AFR][1000 genomes]
rs73780325	0.93[AFR][1000 genomes]
rs73780326	0.93[AFR][1000 genomes]
rs73780327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780328	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7734835	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518494	chr5:115864578-115869260	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:115860000-115869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:115860000-115872200	Enhancers	HepG2	liver
6	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:115864400-115870200	Weak transcription	Left Ventricle	heart
8	chr5:115864600-115869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115864600-115869400	Weak transcription	Colonic Mucosa	Colon
10	chr5:115864600-115869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:115864600-115870000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
13	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
14	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
15	chr5:115864800-115868400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115864800-115868400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:115864800-115868400	Weak transcription	Fetal Brain Female	brain
18	chr5:115864800-115868600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:115864800-115870000	Weak transcription	Right Atrium	heart
20	chr5:115864800-115872000	Enhancers	Brain Substantia Nigra	brain
21	chr5:115865600-115868600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:115865600-115868600	Weak transcription	Fetal Stomach	stomach
23	chr5:115865600-115870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:115865600-115871600	Weak transcription	Brain Germinal Matrix	brain
25	chr5:115865800-115868400	Weak transcription	Fetal Lung	lung
26	chr5:115865800-115868400	Weak transcription	Small Intestine	intestine
27	chr5:115866000-115868400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:115866000-115868600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr5:115866000-115868800	Weak transcription	Brain Anterior Caudate	brain
30	chr5:115866200-115868400	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:115866200-115870000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:115866400-115873200	Enhancers	Fetal Muscle Leg	muscle
33	chr5:115866600-115868400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:115866600-115868600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr5:115866600-115870000	Enhancers	Placenta	Placenta
36	chr5:115866800-115868600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:115867000-115868400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:115867000-115868400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr5:115867000-115868400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:115867000-115868600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:115867000-115868600	Enhancers	Psoas Muscle	Psoas
42	chr5:115867000-115869000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr5:115867000-115869000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr5:115867000-115870600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr5:115867000-115871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:115867200-115869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr5:115867400-115868400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:115867400-115869200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr5:115867400-115872000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr5:115867400-115872000	Enhancers	HUES64 Cell Line	embryonic stem cell

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