Variant report

Variant	rs73780324
Chromosome Location	chr5:115869245-115869246
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11746151	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17140038	0.92[EUR][1000 genomes]
rs17140041	0.99[AFR][1000 genomes]
rs6885611	0.99[AFR][1000 genomes]
rs6885885	0.99[AFR][1000 genomes]
rs6890131	0.93[AFR][1000 genomes]
rs73780323	0.84[AFR][1000 genomes]
rs73780325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780327	0.81[AFR][1000 genomes]
rs7701953	0.90[EUR][1000 genomes]
rs7706935	0.93[EUR][1000 genomes]
rs7734835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518494	chr5:115864578-115869260	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:115860000-115869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:115860000-115872200	Enhancers	HepG2	liver
6	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:115864400-115870200	Weak transcription	Left Ventricle	heart
8	chr5:115864600-115869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115864600-115869400	Weak transcription	Colonic Mucosa	Colon
10	chr5:115864600-115869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:115864600-115870000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
13	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
14	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
15	chr5:115864800-115870000	Weak transcription	Right Atrium	heart
16	chr5:115864800-115872000	Enhancers	Brain Substantia Nigra	brain
17	chr5:115865600-115870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:115865600-115871600	Weak transcription	Brain Germinal Matrix	brain
19	chr5:115866200-115870000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:115866400-115873200	Enhancers	Fetal Muscle Leg	muscle
21	chr5:115866600-115870000	Enhancers	Placenta	Placenta
22	chr5:115867000-115870600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:115867000-115871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:115867200-115869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:115867400-115872000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr5:115867400-115872000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:115867600-115870000	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr5:115867600-115873200	Enhancers	Colon Smooth Muscle	Colon
29	chr5:115867800-115869400	Weak transcription	Pancreas	Pancrea
30	chr5:115867800-115869800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:115867800-115870800	Weak transcription	Lung	lung
32	chr5:115868000-115870200	Enhancers	Fetal Kidney	kidney
33	chr5:115868000-115872800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:115868000-115873200	Enhancers	Stomach Smooth Muscle	stomach
35	chr5:115868200-115869400	Weak transcription	Gastric	stomach
36	chr5:115868200-115872000	Enhancers	Brain Angular Gyrus	brain
37	chr5:115868200-115873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr5:115868400-115869400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:115868400-115869600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:115868400-115871000	Enhancers	Small Intestine	intestine
41	chr5:115868400-115871200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr5:115868400-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:115868400-115871800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:115868400-115871800	Enhancers	Brain Hippocampus Middle	brain
45	chr5:115868400-115873000	Enhancers	Fetal Lung	lung
46	chr5:115868600-115869400	Enhancers	Duodenum Mucosa	Duodenum
47	chr5:115868600-115869600	Enhancers	Fetal Stomach	stomach
48	chr5:115868600-115870200	Enhancers	Rectal Smooth Muscle	rectum
49	chr5:115868600-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr5:115868600-115871800	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links