Variant report

Variant	rs17140038
Chromosome Location	chr5:115868611-115868612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap]
rs10069729	1.00[JPT][hapmap]
rs11746150	1.00[CEU][hapmap]
rs12513595	1.00[ASN][1000 genomes]
rs12515719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs154576	1.00[JPT][hapmap]
rs17139989	1.00[JPT][hapmap]
rs17139996	1.00[JPT][hapmap]
rs17139999	1.00[JPT][hapmap]
rs17140027	1.00[JPT][hapmap]
rs17140055	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17140067	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6594971	1.00[JPT][hapmap]
rs73780324	0.92[EUR][1000 genomes]
rs73780325	0.92[EUR][1000 genomes]
rs73780326	0.92[EUR][1000 genomes]
rs7701953	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7706935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7707177	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7726579	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7732051	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs7734835	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7736072	1.00[JPT][hapmap]
rs965146	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518494	chr5:115864578-115869260	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:115860000-115869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:115860000-115872200	Enhancers	HepG2	liver
6	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:115864400-115870200	Weak transcription	Left Ventricle	heart
8	chr5:115864600-115869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115864600-115869400	Weak transcription	Colonic Mucosa	Colon
10	chr5:115864600-115869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:115864600-115870000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
13	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
14	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
15	chr5:115864800-115870000	Weak transcription	Right Atrium	heart
16	chr5:115864800-115872000	Enhancers	Brain Substantia Nigra	brain
17	chr5:115865600-115870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:115865600-115871600	Weak transcription	Brain Germinal Matrix	brain
19	chr5:115866000-115868800	Weak transcription	Brain Anterior Caudate	brain
20	chr5:115866200-115870000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:115866400-115873200	Enhancers	Fetal Muscle Leg	muscle
22	chr5:115866600-115870000	Enhancers	Placenta	Placenta
23	chr5:115867000-115869000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:115867000-115869000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr5:115867000-115870600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr5:115867000-115871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:115867200-115869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:115867400-115869200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr5:115867400-115872000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr5:115867400-115872000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr5:115867600-115869200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr5:115867600-115870000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr5:115867600-115873200	Enhancers	Colon Smooth Muscle	Colon
34	chr5:115867800-115869400	Weak transcription	Pancreas	Pancrea
35	chr5:115867800-115869800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:115867800-115870800	Weak transcription	Lung	lung
37	chr5:115868000-115868800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:115868000-115869200	Enhancers	Fetal Heart	heart
39	chr5:115868000-115870200	Enhancers	Fetal Kidney	kidney
40	chr5:115868000-115872800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr5:115868000-115873200	Enhancers	Stomach Smooth Muscle	stomach
42	chr5:115868200-115868800	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr5:115868200-115869000	Enhancers	Liver	Liver
44	chr5:115868200-115869400	Weak transcription	Gastric	stomach
45	chr5:115868200-115872000	Enhancers	Brain Angular Gyrus	brain
46	chr5:115868200-115873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr5:115868400-115868800	Enhancers	Fetal Brain Female	brain
48	chr5:115868400-115869000	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr5:115868400-115869200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:115868400-115869200	Weak transcription	H9 Cell Line	embryonic stem cell

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