Variant report

Variant	rs6594971
Chromosome Location	chr5:115859436-115859437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap]
rs10069729	1.00[JPT][hapmap]
rs11744577	1.00[ASN][1000 genomes]
rs12513595	0.81[AMR][1000 genomes]
rs12515719	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs154576	1.00[JPT][hapmap]
rs17139989	1.00[JPT][hapmap]
rs17139996	1.00[JPT][hapmap]
rs17139999	1.00[JPT][hapmap]
rs17140027	1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140038	1.00[JPT][hapmap]
rs17140055	1.00[JPT][hapmap]
rs17140061	1.00[JPT][hapmap]
rs17140067	1.00[JPT][hapmap]
rs56331457	0.87[AMR][1000 genomes]
rs61261004	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7706935	1.00[JPT][hapmap]
rs7707177	1.00[JPT][hapmap]
rs7726579	1.00[JPT][hapmap]
rs7732051	1.00[JPT][hapmap]
rs7736072	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs965146	1.00[JPT][hapmap]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115839600-115859800	Weak transcription	Colonic Mucosa	Colon
3	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
4	chr5:115847200-115859800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
7	chr5:115854200-115859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:115854600-115860800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:115854800-115859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:115855400-115864000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:115855600-115859800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:115855800-115861200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:115856200-115862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:115856400-115860800	Enhancers	Brain Hippocampus Middle	brain
15	chr5:115856400-115861200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:115856600-115861400	Enhancers	Colon Smooth Muscle	Colon
17	chr5:115856800-115860400	Enhancers	Brain Angular Gyrus	brain
18	chr5:115857200-115860000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:115857200-115861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:115857400-115860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:115857400-115860800	Weak transcription	Psoas Muscle	Psoas
22	chr5:115857400-115863200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:115857400-115864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:115857400-115864000	Weak transcription	Left Ventricle	heart
25	chr5:115857400-115864000	Weak transcription	Pancreas	Pancrea
26	chr5:115857400-115864400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:115857400-115865400	Weak transcription	Ovary	ovary
28	chr5:115857800-115863200	Weak transcription	Fetal Lung	lung
29	chr5:115857800-115864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:115858000-115863000	Enhancers	Fetal Intestine Large	intestine
31	chr5:115858200-115861000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:115858200-115867000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:115858400-115859600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr5:115858600-115859600	Weak transcription	Fetal Intestine Small	intestine
36	chr5:115858800-115859800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:115858800-115859800	Weak transcription	Fetal Kidney	kidney
38	chr5:115858800-115859800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr5:115858800-115864400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:115859000-115860000	Weak transcription	Brain Substantia Nigra	brain
41	chr5:115859000-115860200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:115859000-115861200	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:115859000-115861600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr5:115859000-115864000	Weak transcription	Placenta	Placenta
45	chr5:115859200-115859600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:115859200-115859600	Weak transcription	Fetal Stomach	stomach
47	chr5:115859200-115859600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr5:115859200-115860000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:115859200-115860400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr5:115859200-115860600	Enhancers	Brain Inferior Temporal Lobe	brain

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