Variant report

Variant rs17140055
Chromosome Location chr5:115873314-115873315
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115858400-115873600 Enhancers iPS-15b Cell Line embryonic stem cell
2 chr5:115868600-115876000 Weak transcription Psoas Muscle Psoas
3 chr5:115869000-115873400 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr5:115869600-115875200 Genic enhancers iPS-20b Cell Line embryonic stem cell
5 chr5:115871000-115890400 Weak transcription Pancreas Pancrea
6 chr5:115871200-115873400 Enhancers iPS-18 Cell Line embryonic stem cell
7 chr5:115871400-115882000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr5:115872000-115873400 Genic enhancers HUES48 Cell Line embryonic stem cell
9 chr5:115872000-115876600 Genic enhancers HUES64 Cell Line embryonic stem cell
10 chr5:115872400-115877200 Weak transcription Fetal Stomach stomach
11 chr5:115872600-115873400 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
12 chr5:115872600-115873600 Enhancers Fetal Intestine Small intestine
13 chr5:115872600-115874000 Enhancers HepG2 liver
14 chr5:115872600-115874400 Enhancers ES-I3 Cell Line embryonic stem cell
15 chr5:115872600-115879800 Weak transcription Left Ventricle heart
16 chr5:115872800-115873400 Enhancers ES-WA7 Cell Line embryonic stem cell
17 chr5:115872800-115873400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
18 chr5:115872800-115874600 Enhancers Fetal Intestine Large intestine
19 chr5:115872800-115875000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr5:115872800-115879800 Weak transcription Colonic Mucosa Colon
21 chr5:115873000-115873400 Enhancers Cortex derived primary cultured neurospheres brain
22 chr5:115873000-115873400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
23 chr5:115873000-115873400 Enhancers Brain Cingulate Gyrus brain
24 chr5:115873000-115873600 Enhancers Brain Inferior Temporal Lobe brain
25 chr5:115873000-115876400 Weak transcription H9 Cell Line embryonic stem cell
26 chr5:115873000-115878800 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr5:115873000-115880000 Enhancers Brain Substantia Nigra brain
28 chr5:115873200-115873400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:115873200-115873400 Enhancers Duodenum Mucosa Duodenum
30 chr5:115873200-115873800 Weak transcription Gastric stomach
31 chr5:115873200-115874400 Weak transcription Brain Anterior Caudate brain
32 chr5:115873200-115874400 Weak transcription Brain Hippocampus Middle brain
33 chr5:115873200-115874800 Weak transcription Brain Angular Gyrus brain
34 chr5:115873200-115876200 Weak transcription Colon Smooth Muscle Colon
35 chr5:115873200-115876600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr5:115873200-115877600 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr5:115873200-115878000 Genic enhancers HUES6 Cell Line embryonic stem cell
38 chr5:115873200-115878200 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr5:115873200-115878400 Weak transcription Placenta Placenta
40 chr5:115873200-115879400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr5:115873200-115879400 Weak transcription Small Intestine intestine
42 chr5:115873200-115879800 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr5:115873200-115880600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr5:115873200-115881200 Weak transcription Fetal Muscle Leg muscle
45 chr5:115873200-115881400 Weak transcription H1 Cell Line embryonic stem cell
46 chr5:115873200-115883600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr5:115873200-115889800 Weak transcription Rectal Smooth Muscle rectum

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