Variant report

Variant	rs17139996
Chromosome Location	chr5:115851564-115851565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10039004	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10068086	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069729	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515719	1.00[JPT][hapmap]
rs154576	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139989	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139999	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140027	1.00[JPT][hapmap]
rs17140038	1.00[JPT][hapmap]
rs17140055	1.00[JPT][hapmap]
rs17140061	1.00[JPT][hapmap]
rs17140067	1.00[JPT][hapmap]
rs56331457	1.00[ASN][1000 genomes]
rs57671703	0.84[AMR][1000 genomes]
rs6594971	1.00[JPT][hapmap]
rs7706935	1.00[JPT][hapmap]
rs7707177	1.00[JPT][hapmap]
rs7718662	1.00[ASN][1000 genomes]
rs7726579	1.00[JPT][hapmap]
rs7732051	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7736072	1.00[JPT][hapmap]
rs965145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965146	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115831400-115851800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:115835000-115851600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:115839000-115855600	Weak transcription	Left Ventricle	heart
5	chr5:115839000-115856400	Weak transcription	HSMMtube	muscle
6	chr5:115839600-115859800	Weak transcription	Colonic Mucosa	Colon
7	chr5:115839800-115856400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:115840600-115853800	Weak transcription	Placenta	Placenta
9	chr5:115841600-115858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:115844800-115853400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115845800-115853400	Weak transcription	Lung	lung
12	chr5:115845800-115853600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:115845800-115856800	Weak transcription	Pancreas	Pancrea
14	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
15	chr5:115846200-115855600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:115846400-115852600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:115846800-115852400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:115847200-115859800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr5:115847400-115852600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:115847400-115852600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:115847400-115852600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:115847800-115853400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:115847800-115856800	Weak transcription	Psoas Muscle	Psoas
24	chr5:115848000-115853400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:115848200-115854000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:115848800-115852600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr5:115849000-115854000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:115849600-115853400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:115849600-115857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:115850000-115854200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:115850200-115851600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:115850200-115851800	Enhancers	Fetal Stomach	stomach
34	chr5:115850200-115852200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:115850200-115852400	Enhancers	Fetal Intestine Small	intestine
36	chr5:115850200-115852800	Enhancers	Colon Smooth Muscle	Colon
37	chr5:115850200-115855200	Enhancers	Brain Cingulate Gyrus	brain
38	chr5:115850200-115855200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr5:115850200-115855600	Enhancers	Brain Substantia Nigra	brain
40	chr5:115850400-115851800	Enhancers	Fetal Muscle Leg	muscle
41	chr5:115850400-115852200	Enhancers	Brain Hippocampus Middle	brain
42	chr5:115850400-115853000	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr5:115850400-115855200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr5:115850600-115851600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:115850600-115851800	Weak transcription	Brain Anterior Caudate	brain
46	chr5:115850600-115852000	Enhancers	Fetal Kidney	kidney
47	chr5:115850600-115852600	Enhancers	Fetal Lung	lung
48	chr5:115850600-115855800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr5:115850600-115855800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr5:115850800-115851800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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