Variant report

Variant	rs17140027
Chromosome Location	chr5:115859983-115859984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115851753..115853692-chr5:115859815..115863109,3	K562	blood:

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap]
rs10069729	1.00[JPT][hapmap]
rs11744577	1.00[ASN][1000 genomes]
rs12513595	0.90[AMR][1000 genomes]
rs12515719	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs154576	1.00[JPT][hapmap]
rs17139989	1.00[JPT][hapmap]
rs17139996	1.00[JPT][hapmap]
rs17139999	1.00[JPT][hapmap]
rs17140038	1.00[JPT][hapmap]
rs17140055	1.00[JPT][hapmap]
rs17140061	1.00[JPT][hapmap]
rs17140067	1.00[JPT][hapmap]
rs61261004	1.00[ASN][1000 genomes]
rs6594971	1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706935	1.00[JPT][hapmap]
rs7707177	1.00[JPT][hapmap]
rs7718662	0.82[AMR][1000 genomes]
rs7726579	1.00[JPT][hapmap]
rs7732051	1.00[JPT][hapmap]
rs7736072	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs965146	1.00[JPT][hapmap]

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
3	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
5	chr5:115854600-115860800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:115855400-115864000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:115855800-115861200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:115856200-115862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:115856400-115860800	Enhancers	Brain Hippocampus Middle	brain
10	chr5:115856400-115861200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:115856600-115861400	Enhancers	Colon Smooth Muscle	Colon
12	chr5:115856800-115860400	Enhancers	Brain Angular Gyrus	brain
13	chr5:115857200-115860000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:115857200-115861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:115857400-115860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:115857400-115860800	Weak transcription	Psoas Muscle	Psoas
17	chr5:115857400-115863200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:115857400-115864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:115857400-115864000	Weak transcription	Left Ventricle	heart
20	chr5:115857400-115864000	Weak transcription	Pancreas	Pancrea
21	chr5:115857400-115864400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:115857400-115865400	Weak transcription	Ovary	ovary
23	chr5:115857800-115863200	Weak transcription	Fetal Lung	lung
24	chr5:115857800-115864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:115858000-115863000	Enhancers	Fetal Intestine Large	intestine
26	chr5:115858200-115861000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr5:115858200-115867000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr5:115858800-115864400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:115859000-115860000	Weak transcription	Brain Substantia Nigra	brain
31	chr5:115859000-115860200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:115859000-115861200	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:115859000-115861600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:115859000-115864000	Weak transcription	Placenta	Placenta
35	chr5:115859200-115860000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:115859200-115860400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:115859200-115860600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr5:115859200-115861200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:115859400-115860000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr5:115859400-115860000	Enhancers	Stomach Smooth Muscle	stomach
41	chr5:115859400-115860400	Enhancers	Brain Anterior Caudate	brain
42	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr5:115859600-115860000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr5:115859600-115860600	Enhancers	Brain Cingulate Gyrus	brain
45	chr5:115859600-115860600	Enhancers	Fetal Heart	heart
46	chr5:115859600-115860800	Enhancers	Fetal Stomach	stomach
47	chr5:115859600-115861000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:115859600-115861000	Enhancers	Rectal Smooth Muscle	rectum
49	chr5:115859600-115864000	Enhancers	Fetal Intestine Small	intestine
50	chr5:115859800-115860000	Enhancers	Colonic Mucosa	Colon

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