Variant report

Variant	rs17140061
Chromosome Location	chr5:115876357-115876358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap]
rs10069729	1.00[JPT][hapmap]
rs11743446	0.85[EUR][1000 genomes]
rs11749266	0.85[EUR][1000 genomes]
rs12513595	0.85[ASN][1000 genomes]
rs12515719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs154576	1.00[JPT][hapmap]
rs17139989	1.00[JPT][hapmap]
rs17139996	1.00[JPT][hapmap]
rs17139999	1.00[JPT][hapmap]
rs17140027	1.00[JPT][hapmap]
rs17140038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17140055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17140067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59890828	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6594971	1.00[JPT][hapmap]
rs7706935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7707177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711559	0.85[EUR][1000 genomes]
rs7726579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730835	1.00[CEU][hapmap]
rs7732051	1.00[JPT][hapmap]
rs7736072	1.00[JPT][hapmap]
rs965146	1.00[JPT][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115871000-115890400	Weak transcription	Pancreas	Pancrea
2	chr5:115871400-115882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:115872000-115876600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:115872400-115877200	Weak transcription	Fetal Stomach	stomach
5	chr5:115872600-115879800	Weak transcription	Left Ventricle	heart
6	chr5:115872800-115879800	Weak transcription	Colonic Mucosa	Colon
7	chr5:115873000-115876400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:115873000-115878800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:115873000-115880000	Enhancers	Brain Substantia Nigra	brain
10	chr5:115873200-115876600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:115873200-115877600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:115873200-115878000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:115873200-115878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:115873200-115878400	Weak transcription	Placenta	Placenta
15	chr5:115873200-115879400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:115873200-115879400	Weak transcription	Small Intestine	intestine
17	chr5:115873200-115879800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:115873200-115880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:115873200-115881200	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:115873200-115881400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:115873200-115883600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:115873200-115889800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:115873400-115876600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr5:115874400-115877200	Enhancers	Brain Anterior Caudate	brain
25	chr5:115874400-115878800	Enhancers	Brain Hippocampus Middle	brain
26	chr5:115874800-115877000	Enhancers	Brain Angular Gyrus	brain
27	chr5:115874800-115878200	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:115875000-115876400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:115875200-115876800	Weak transcription	Fetal Intestine Small	intestine
30	chr5:115875200-115878600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr5:115875200-115879800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:115875200-115880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:115875400-115876400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr5:115875400-115878400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:115875400-115880800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:115875800-115876600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr5:115876000-115876400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr5:115876000-115876400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:115876000-115876400	Enhancers	Psoas Muscle	Psoas
40	chr5:115876000-115876600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:115876000-115877000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr5:115876000-115878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:115876200-115876800	Enhancers	Colon Smooth Muscle	Colon
44	chr5:115876200-115876800	Enhancers	Fetal Intestine Large	intestine

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