The 2.0 version of rSNPBase

Variant report

Variant rs12513595
Chromosome Location chr5:115874322-115874323
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115868600-115876000 Weak transcription Psoas Muscle Psoas
2 chr5:115869600-115875200 Genic enhancers iPS-20b Cell Line embryonic stem cell
3 chr5:115871000-115890400 Weak transcription Pancreas Pancrea
4 chr5:115871400-115882000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr5:115872000-115876600 Genic enhancers HUES64 Cell Line embryonic stem cell
6 chr5:115872400-115877200 Weak transcription Fetal Stomach stomach
7 chr5:115872600-115874400 Enhancers ES-I3 Cell Line embryonic stem cell
8 chr5:115872600-115879800 Weak transcription Left Ventricle heart
9 chr5:115872800-115874600 Enhancers Fetal Intestine Large intestine
10 chr5:115872800-115875000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr5:115872800-115879800 Weak transcription Colonic Mucosa Colon
12 chr5:115873000-115876400 Weak transcription H9 Cell Line embryonic stem cell
13 chr5:115873000-115878800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr5:115873000-115880000 Enhancers Brain Substantia Nigra brain
15 chr5:115873200-115874400 Weak transcription Brain Anterior Caudate brain
16 chr5:115873200-115874400 Weak transcription Brain Hippocampus Middle brain
17 chr5:115873200-115874800 Weak transcription Brain Angular Gyrus brain
18 chr5:115873200-115876200 Weak transcription Colon Smooth Muscle Colon
19 chr5:115873200-115876600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr5:115873200-115877600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:115873200-115878000 Genic enhancers HUES6 Cell Line embryonic stem cell
22 chr5:115873200-115878200 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr5:115873200-115878400 Weak transcription Placenta Placenta
24 chr5:115873200-115879400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr5:115873200-115879400 Weak transcription Small Intestine intestine
26 chr5:115873200-115879800 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr5:115873200-115880600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr5:115873200-115881200 Weak transcription Fetal Muscle Leg muscle
29 chr5:115873200-115881400 Weak transcription H1 Cell Line embryonic stem cell
30 chr5:115873200-115883600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr5:115873200-115889800 Weak transcription Rectal Smooth Muscle rectum
32 chr5:115873400-115874600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr5:115873400-115874800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr5:115873400-115874800 Weak transcription Brain Cingulate Gyrus brain
35 chr5:115873400-115875000 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr5:115873400-115875800 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr5:115873400-115876000 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr5:115873400-115876000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr5:115873400-115876000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr5:115873400-115876600 Weak transcription Duodenum Mucosa Duodenum
41 chr5:115873600-115874800 Weak transcription Brain Inferior Temporal Lobe brain
42 chr5:115873600-115874800 Weak transcription Fetal Intestine Small intestine
43 chr5:115874000-115875000 Enhancers iPS-15b Cell Line embryonic stem cell
44 chr5:115874200-115874600 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015