Variant report

Variant	rs12515719
Chromosome Location	chr5:115875671-115875672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap]
rs10069729	1.00[JPT][hapmap]
rs12513595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs154576	1.00[JPT][hapmap]
rs17139989	1.00[JPT][hapmap]
rs17139996	1.00[JPT][hapmap]
rs17139999	1.00[JPT][hapmap]
rs17140027	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17140038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17140055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17140061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17140067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6594971	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs7706935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7707177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7718662	0.82[AMR][1000 genomes]
rs7726579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7732051	1.00[JPT][hapmap]
rs7736072	1.00[JPT][hapmap]
rs965146	1.00[JPT][hapmap]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115868600-115876000	Weak transcription	Psoas Muscle	Psoas
2	chr5:115871000-115890400	Weak transcription	Pancreas	Pancrea
3	chr5:115871400-115882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:115872000-115876600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:115872400-115877200	Weak transcription	Fetal Stomach	stomach
6	chr5:115872600-115879800	Weak transcription	Left Ventricle	heart
7	chr5:115872800-115879800	Weak transcription	Colonic Mucosa	Colon
8	chr5:115873000-115876400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:115873000-115878800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:115873000-115880000	Enhancers	Brain Substantia Nigra	brain
11	chr5:115873200-115876200	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:115873200-115876600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:115873200-115877600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:115873200-115878000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:115873200-115878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:115873200-115878400	Weak transcription	Placenta	Placenta
17	chr5:115873200-115879400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:115873200-115879400	Weak transcription	Small Intestine	intestine
19	chr5:115873200-115879800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:115873200-115880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:115873200-115881200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:115873200-115881400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr5:115873200-115883600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:115873200-115889800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:115873400-115875800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:115873400-115876000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:115873400-115876000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:115873400-115876000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:115873400-115876600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr5:115874400-115877200	Enhancers	Brain Anterior Caudate	brain
31	chr5:115874400-115878800	Enhancers	Brain Hippocampus Middle	brain
32	chr5:115874600-115876200	Weak transcription	Fetal Intestine Large	intestine
33	chr5:115874800-115877000	Enhancers	Brain Angular Gyrus	brain
34	chr5:115874800-115878200	Enhancers	Brain Cingulate Gyrus	brain
35	chr5:115875000-115876400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr5:115875200-115876000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:115875200-115876800	Weak transcription	Fetal Intestine Small	intestine
38	chr5:115875200-115878600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr5:115875200-115879800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:115875200-115880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:115875400-115876400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:115875400-115878400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:115875400-115880800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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