Variant report

Variant	rs154576
Chromosome Location	chr5:115861632-115861633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115851753..115853692-chr5:115859815..115863109,3	K562	blood:

rs_ID	r²[population]
rs10039004	1.00[JPT][hapmap]
rs10068086	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10069729	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12515719	1.00[JPT][hapmap]
rs153645	0.85[AMR][1000 genomes]
rs17139989	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139996	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139999	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140027	1.00[JPT][hapmap]
rs17140038	1.00[JPT][hapmap]
rs17140055	1.00[JPT][hapmap]
rs17140061	1.00[JPT][hapmap]
rs17140067	1.00[JPT][hapmap]
rs56331457	1.00[ASN][1000 genomes]
rs6594971	1.00[JPT][hapmap]
rs7706935	1.00[JPT][hapmap]
rs7707177	1.00[JPT][hapmap]
rs7718662	1.00[ASN][1000 genomes]
rs7726579	1.00[JPT][hapmap]
rs7732051	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7736072	1.00[JPT][hapmap]
rs965145	1.00[ASN][1000 genomes]
rs965146	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
3	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
5	chr5:115855400-115864000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:115856200-115862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:115857200-115861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:115857400-115863200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:115857400-115864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:115857400-115864000	Weak transcription	Left Ventricle	heart
11	chr5:115857400-115864000	Weak transcription	Pancreas	Pancrea
12	chr5:115857400-115864400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:115857400-115865400	Weak transcription	Ovary	ovary
14	chr5:115857800-115863200	Weak transcription	Fetal Lung	lung
15	chr5:115857800-115864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:115858000-115863000	Enhancers	Fetal Intestine Large	intestine
17	chr5:115858200-115867000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:115858800-115864400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:115859000-115864000	Weak transcription	Placenta	Placenta
21	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:115859600-115864000	Enhancers	Fetal Intestine Small	intestine
23	chr5:115859800-115862000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr5:115859800-115862200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr5:115860000-115864000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:115860000-115865400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:115860000-115869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:115860000-115872200	Enhancers	HepG2	liver
30	chr5:115860200-115867000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:115860400-115863000	Weak transcription	Brain Anterior Caudate	brain
32	chr5:115860400-115863200	Weak transcription	Brain Angular Gyrus	brain
33	chr5:115860600-115862400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr5:115860600-115863000	Weak transcription	Brain Substantia Nigra	brain
35	chr5:115860600-115863400	Weak transcription	Fetal Heart	heart
36	chr5:115860600-115864000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:115860600-115865600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:115860800-115862000	Weak transcription	Liver	Liver
39	chr5:115860800-115863400	Weak transcription	Fetal Stomach	stomach
40	chr5:115861000-115862000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:115861000-115863000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:115861000-115864000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:115861000-115864000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:115861200-115862200	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr5:115861200-115862400	Enhancers	Brain Hippocampus Middle	brain
47	chr5:115861200-115865600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr5:115861400-115862400	Active TSS	Duodenum Mucosa	Duodenum
49	chr5:115861400-115863600	Weak transcription	Colon Smooth Muscle	Colon
50	chr5:115861400-115864000	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links