Variant report

Variant	rs17140041
Chromosome Location	chr5:115869758-115869759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11746150	0.86[CEU][hapmap]
rs17140058	0.80[LWK][hapmap]
rs57183792	0.88[EUR][1000 genomes]
rs6885611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6885885	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897908	0.80[LWK][hapmap]
rs73780323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780324	0.99[AFR][1000 genomes]
rs73780325	0.99[AFR][1000 genomes]
rs73780326	0.99[AFR][1000 genomes]
rs73780327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:115860000-115872200	Enhancers	HepG2	liver
5	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:115864400-115870200	Weak transcription	Left Ventricle	heart
7	chr5:115864600-115870000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
9	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
10	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
11	chr5:115864800-115870000	Weak transcription	Right Atrium	heart
12	chr5:115864800-115872000	Enhancers	Brain Substantia Nigra	brain
13	chr5:115865600-115870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:115865600-115871600	Weak transcription	Brain Germinal Matrix	brain
15	chr5:115866200-115870000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:115866400-115873200	Enhancers	Fetal Muscle Leg	muscle
17	chr5:115866600-115870000	Enhancers	Placenta	Placenta
18	chr5:115867000-115870600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr5:115867000-115871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:115867400-115872000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:115867400-115872000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:115867600-115870000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr5:115867600-115873200	Enhancers	Colon Smooth Muscle	Colon
24	chr5:115867800-115869800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:115867800-115870800	Weak transcription	Lung	lung
26	chr5:115868000-115870200	Enhancers	Fetal Kidney	kidney
27	chr5:115868000-115872800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:115868000-115873200	Enhancers	Stomach Smooth Muscle	stomach
29	chr5:115868200-115872000	Enhancers	Brain Angular Gyrus	brain
30	chr5:115868200-115873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:115868400-115871000	Enhancers	Small Intestine	intestine
32	chr5:115868400-115871200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr5:115868400-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:115868400-115871800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:115868400-115871800	Enhancers	Brain Hippocampus Middle	brain
36	chr5:115868400-115873000	Enhancers	Fetal Lung	lung
37	chr5:115868600-115870200	Enhancers	Rectal Smooth Muscle	rectum
38	chr5:115868600-115871600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:115868600-115871800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr5:115868600-115871800	Enhancers	Brain Cingulate Gyrus	brain
41	chr5:115868600-115876000	Weak transcription	Psoas Muscle	Psoas
42	chr5:115868800-115870800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:115868800-115872200	Weak transcription	Fetal Brain Female	brain
44	chr5:115868800-115872200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr5:115869000-115870000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr5:115869000-115870200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr5:115869000-115871400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr5:115869000-115873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:115869200-115870000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:115869200-115870400	Enhancers	H9 Cell Line	embryonic stem cell

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