Variant report

Variant	rs6897908
Chromosome Location	chr5:115857210-115857211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[EUR][1000 genomes]
rs10073342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140041	0.80[LWK][hapmap]
rs17140058	0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs4379240	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	1.00[EUR][1000 genomes]
rs640121	1.00[EUR][1000 genomes]
rs6864548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6879748	1.00[ASW][hapmap];0.81[MKK][hapmap]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]
rs7718743	1.00[EUR][1000 genomes]
rs7718993	1.00[AMR][1000 genomes]

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115839600-115859800	Weak transcription	Colonic Mucosa	Colon
3	chr5:115841600-115858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
5	chr5:115847200-115859800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
8	chr5:115853000-115858000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:115853000-115858800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:115853200-115859000	Enhancers	Fetal Muscle Leg	muscle
11	chr5:115854000-115857400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:115854200-115859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:115854400-115858000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:115854600-115860800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:115854800-115858400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:115854800-115859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:115855200-115858000	Weak transcription	Fetal Kidney	kidney
18	chr5:115855400-115858000	Weak transcription	Fetal Intestine Large	intestine
19	chr5:115855400-115858200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:115855400-115864000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:115855600-115857400	Enhancers	Left Ventricle	heart
22	chr5:115855600-115859800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:115855800-115857400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:115855800-115858200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:115855800-115861200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:115856000-115857400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr5:115856200-115862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr5:115856400-115857400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:115856400-115857400	Enhancers	HSMMtube	muscle
30	chr5:115856400-115859200	Enhancers	Fetal Stomach	stomach
31	chr5:115856400-115860800	Enhancers	Brain Hippocampus Middle	brain
32	chr5:115856400-115861200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr5:115856600-115857400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:115856600-115857400	Enhancers	Brain Cingulate Gyrus	brain
35	chr5:115856600-115857400	Enhancers	HSMM	muscle
36	chr5:115856600-115857600	Enhancers	Brain Substantia Nigra	brain
37	chr5:115856600-115857800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:115856600-115861400	Enhancers	Colon Smooth Muscle	Colon
39	chr5:115856800-115857400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:115856800-115857400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:115856800-115857400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr5:115856800-115857400	Enhancers	Ovary	ovary
43	chr5:115856800-115857400	Enhancers	Pancreas	Pancrea
44	chr5:115856800-115857400	Enhancers	Psoas Muscle	Psoas
45	chr5:115856800-115857800	Enhancers	Fetal Lung	lung
46	chr5:115856800-115860400	Enhancers	Brain Angular Gyrus	brain
47	chr5:115857000-115857400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:115857000-115857400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr5:115857000-115858200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:115857000-115859200	Enhancers	Rectal Smooth Muscle	rectum

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