Variant report

Variant	rs6864548
Chromosome Location	chr5:115879836-115879837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115877417..115881209-chr5:115881240..115883420,3	K562	blood:

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[EUR][1000 genomes]
rs10073342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140058	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs4379240	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	1.00[EUR][1000 genomes]
rs640121	1.00[EUR][1000 genomes]
rs6897908	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]
rs7718743	1.00[EUR][1000 genomes]

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115871000-115890400	Weak transcription	Pancreas	Pancrea
2	chr5:115871400-115882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:115873000-115880000	Enhancers	Brain Substantia Nigra	brain
4	chr5:115873200-115880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:115873200-115881200	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:115873200-115881400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:115873200-115883600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:115873200-115889800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:115875200-115880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:115875400-115880800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:115876400-115880400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:115876400-115886200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:115877000-115881400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:115877000-115881400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:115877400-115880200	Enhancers	Fetal Intestine Small	intestine
16	chr5:115877600-115882000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:115877800-115883800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:115878000-115880000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:115878000-115881600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:115878200-115880000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:115878200-115880400	Enhancers	Fetal Intestine Large	intestine
22	chr5:115878200-115882000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:115878200-115893200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr5:115878400-115880400	Enhancers	Placenta	Placenta
25	chr5:115878800-115881600	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:115879000-115881000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:115879000-115881200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:115879200-115880000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:115879200-115880000	Enhancers	Fetal Lung	lung
30	chr5:115879200-115880000	Enhancers	NHEK	skin
31	chr5:115879400-115880000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:115879400-115880000	Enhancers	Brain Angular Gyrus	brain
33	chr5:115879400-115880000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr5:115879400-115880000	Enhancers	Small Intestine	intestine
35	chr5:115879400-115880000	Enhancers	HMEC	breast
36	chr5:115879400-115880400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
37	chr5:115879400-115880800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr5:115879400-115880800	Enhancers	Fetal Kidney	kidney
39	chr5:115879400-115881400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:115879400-115883000	Weak transcription	Brain Anterior Caudate	brain
41	chr5:115879600-115880800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:115879800-115880000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:115879800-115880000	Enhancers	Colonic Mucosa	Colon
44	chr5:115879800-115880000	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr5:115879800-115880000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr5:115879800-115880200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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