Variant report

Variant	rs7718743
Chromosome Location	chr5:115900980-115900981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115895001..115897524-chr5:115899186..115901085,2	K562	blood:

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10073342	1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140058	1.00[EUR][1000 genomes]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs4379240	0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs640121	1.00[EUR][1000 genomes]
rs6864548	1.00[EUR][1000 genomes]
rs6897908	1.00[EUR][1000 genomes]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115886600-115901000	Weak transcription	Placenta	Placenta
2	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
3	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
4	chr5:115891000-115907600	Weak transcription	Ovary	ovary
5	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
6	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:115893800-115902400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:115894400-115902600	Enhancers	Brain Substantia Nigra	brain
9	chr5:115895600-115901400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:115895800-115902400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
13	chr5:115896000-115905200	Weak transcription	Lung	lung
14	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:115896200-115901000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:115896400-115904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:115897200-115901000	Weak transcription	Fetal Intestine Large	intestine
19	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
20	chr5:115898000-115903600	Enhancers	Brain Angular Gyrus	brain
21	chr5:115898400-115902600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:115898800-115901000	Weak transcription	Pancreas	Pancrea
25	chr5:115898800-115902200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:115898800-115902200	Enhancers	Fetal Brain Female	brain
27	chr5:115898800-115902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:115898800-115902400	Weak transcription	Left Ventricle	heart
29	chr5:115898800-115904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:115898800-115904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:115899000-115901200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:115899000-115902600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr5:115899200-115901800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr5:115899400-115902000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:115899400-115903200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:115899600-115902000	Enhancers	Fetal Muscle Leg	muscle
37	chr5:115899600-115902800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
38	chr5:115899800-115901400	Weak transcription	Brain Germinal Matrix	brain
39	chr5:115899800-115902600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr5:115899800-115903600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:115900000-115901400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:115900000-115904000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:115900200-115901400	Enhancers	Small Intestine	intestine
44	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:115900400-115901000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
46	chr5:115900400-115901000	Active TSS	Brain Anterior Caudate	brain
47	chr5:115900400-115901200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr5:115900400-115901200	Enhancers	Adipose Nuclei	Adipose
49	chr5:115900400-115901400	Weak transcription	Fetal Intestine Small	intestine
50	chr5:115900400-115901800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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