Variant report

Variant	rs17140058
Chromosome Location	chr5:115874514-115874515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115874437-115874563	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115873178..115874811-chr5:115890679..115892572,2	K562	blood:

Variant related genes	Relation type
SEMA6A	TF binding region

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[EUR][1000 genomes]
rs10073342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140041	0.80[LWK][hapmap]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs4379240	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	1.00[EUR][1000 genomes]
rs640121	1.00[EUR][1000 genomes]
rs6864548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6879748	0.81[MKK][hapmap]
rs6897908	0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]
rs7718743	1.00[EUR][1000 genomes]

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115868600-115876000	Weak transcription	Psoas Muscle	Psoas
2	chr5:115869600-115875200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:115871000-115890400	Weak transcription	Pancreas	Pancrea
4	chr5:115871400-115882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:115872000-115876600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:115872400-115877200	Weak transcription	Fetal Stomach	stomach
7	chr5:115872600-115879800	Weak transcription	Left Ventricle	heart
8	chr5:115872800-115874600	Enhancers	Fetal Intestine Large	intestine
9	chr5:115872800-115875000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:115872800-115879800	Weak transcription	Colonic Mucosa	Colon
11	chr5:115873000-115876400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:115873000-115878800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:115873000-115880000	Enhancers	Brain Substantia Nigra	brain
14	chr5:115873200-115874800	Weak transcription	Brain Angular Gyrus	brain
15	chr5:115873200-115876200	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:115873200-115876600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:115873200-115877600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:115873200-115878000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:115873200-115878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:115873200-115878400	Weak transcription	Placenta	Placenta
21	chr5:115873200-115879400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:115873200-115879400	Weak transcription	Small Intestine	intestine
23	chr5:115873200-115879800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:115873200-115880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:115873200-115881200	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:115873200-115881400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:115873200-115883600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:115873200-115889800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:115873400-115874600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:115873400-115874800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:115873400-115874800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr5:115873400-115875000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:115873400-115875800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr5:115873400-115876000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr5:115873400-115876000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:115873400-115876000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:115873400-115876600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr5:115873600-115874800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:115873600-115874800	Weak transcription	Fetal Intestine Small	intestine
40	chr5:115874000-115875000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:115874200-115874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr5:115874400-115875400	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr5:115874400-115877200	Enhancers	Brain Anterior Caudate	brain
44	chr5:115874400-115878800	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links