Variant report

Variant	rs640121
Chromosome Location	chr5:115940549-115940550
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[EUR][1000 genomes]
rs10073342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140058	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs4379240	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	1.00[EUR][1000 genomes]
rs6864548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6897908	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]
rs7718743	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115936800-115940600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:115937000-115941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:115938600-115940600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:115938800-115941200	Weak transcription	Aorta	Aorta
6	chr5:115939000-115943000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:115939200-115940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:115939200-115941000	Weak transcription	Fetal Lung	lung
9	chr5:115939400-115941800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:115939800-115941600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:115939800-115942200	Enhancers	Colon Smooth Muscle	Colon
12	chr5:115939800-115949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:115940400-115941400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:115940400-115941800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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