Variant report

Variant	rs4379240
Chromosome Location	chr5:115903330-115903331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:115903078..115905605-chr5:115909022..115912009,2	MCF-7	breast:
2	chr5:115901171..115903788-chr5:115907458..115909680,2	K562	blood:
3	chr5:115901171..115904653-chr5:115905070..115909680,4	K562	blood:

Variant related genes	Relation type
ENSG00000249167	Chromatin interaction
ENSG00000092421	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10037569	1.00[EUR][1000 genomes]
rs10061468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10073342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12332586	1.00[EUR][1000 genomes]
rs13355107	1.00[EUR][1000 genomes]
rs13355323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362514	1.00[EUR][1000 genomes]
rs17140058	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17140180	1.00[EUR][1000 genomes]
rs28677890	1.00[EUR][1000 genomes]
rs58841498	1.00[EUR][1000 genomes]
rs60190258	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs640121	1.00[EUR][1000 genomes]
rs6864548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6897908	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73256769	1.00[EUR][1000 genomes]
rs73780329	1.00[EUR][1000 genomes]
rs73780382	1.00[EUR][1000 genomes]
rs7711834	1.00[EUR][1000 genomes]
rs7718743	0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
2	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
3	chr5:115891000-115907600	Weak transcription	Ovary	ovary
4	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
5	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
8	chr5:115896000-115905200	Weak transcription	Lung	lung
9	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:115896400-115904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
13	chr5:115898000-115903600	Enhancers	Brain Angular Gyrus	brain
14	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:115898800-115904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:115898800-115904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:115899800-115903600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:115900000-115904000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:115900600-115907000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:115901000-115908000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
23	chr5:115901200-115907600	Weak transcription	Pancreas	Pancrea
24	chr5:115901600-115903400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:115901800-115903800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr5:115901800-115906600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
27	chr5:115902000-115905200	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:115902000-115906800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:115902200-115903600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:115902200-115904000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:115902200-115904400	Weak transcription	Fetal Brain Female	brain
32	chr5:115902400-115903400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:115902400-115904400	Weak transcription	Fetal Lung	lung
34	chr5:115902400-115906000	Enhancers	HepG2	liver
35	chr5:115902600-115903400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:115902600-115903600	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:115902600-115904000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:115902600-115904200	Weak transcription	Brain Anterior Caudate	brain
39	chr5:115902600-115904200	Weak transcription	Fetal Brain Male	brain
40	chr5:115902600-115904400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:115902600-115904400	Weak transcription	Brain Substantia Nigra	brain
42	chr5:115902600-115904800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:115902800-115903400	Enhancers	Fetal Intestine Small	intestine
44	chr5:115902800-115904200	Weak transcription	Fetal Intestine Large	intestine
45	chr5:115902800-115904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:115902800-115904400	Weak transcription	Fetal Kidney	kidney
47	chr5:115902800-115904600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:115902800-115905200	Weak transcription	Placenta	Placenta
49	chr5:115903000-115903400	Weak transcription	Left Ventricle	heart
50	chr5:115903000-115905000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell

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