Variant report

Variant	rs73825715
Chromosome Location	chr4:76973486-76973487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76972794..76974652-chr4:76976393..76979116,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17001246	1.00[AMR][1000 genomes]
rs17001265	1.00[AMR][1000 genomes]
rs17001277	1.00[AMR][1000 genomes]
rs17001289	1.00[AMR][1000 genomes]
rs17001354	1.00[AMR][1000 genomes]
rs17001355	1.00[AMR][1000 genomes]
rs17001359	1.00[AMR][1000 genomes]
rs17001362	1.00[AMR][1000 genomes]
rs17001366	1.00[AMR][1000 genomes]
rs17001367	1.00[AMR][1000 genomes]
rs17001596	1.00[AMR][1000 genomes]
rs17001619	1.00[AMR][1000 genomes]
rs17001626	1.00[AMR][1000 genomes]
rs17001627	1.00[AMR][1000 genomes]
rs17001636	1.00[AMR][1000 genomes]
rs17001639	1.00[AMR][1000 genomes]
rs41457447	1.00[AMR][1000 genomes]
rs4382064	1.00[AMR][1000 genomes]
rs4487370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55998455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56252973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350100	1.00[AMR][1000 genomes]
rs56653729	1.00[AMR][1000 genomes]
rs57005804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57415085	1.00[AMR][1000 genomes]
rs58605269	1.00[AMR][1000 genomes]
rs60337837	1.00[AMR][1000 genomes]
rs60367545	1.00[AMR][1000 genomes]
rs60885790	1.00[AMR][1000 genomes]
rs61253655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61347786	1.00[AMR][1000 genomes]
rs61606865	1.00[AMR][1000 genomes]
rs62639704	1.00[AMR][1000 genomes]
rs73825720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825882	1.00[AMR][1000 genomes]
rs73826307	1.00[AMR][1000 genomes]
rs73826308	1.00[AMR][1000 genomes]
rs73826312	1.00[AMR][1000 genomes]
rs73826315	1.00[AMR][1000 genomes]
rs73826333	1.00[AMR][1000 genomes]
rs73826378	1.00[AMR][1000 genomes]
rs73826380	1.00[AMR][1000 genomes]
rs73826385	1.00[AMR][1000 genomes]
rs73826388	1.00[AMR][1000 genomes]
rs7661525	1.00[AMR][1000 genomes]
rs7685216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1810835	chr4:76961802-76974351	Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594692	chr4:76964188-76974351	Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76965000-76977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:76971000-76974800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:76971200-76975000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:76973400-76973800	Enhancers	Hela-S3	cervix
5	chr4:76973400-76975000	Weak transcription	Primary monocytes fromperipheralblood	blood

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