Variant report

Variant	rs73826380
Chromosome Location	chr4:77084873-77084874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77084049..77086922-chr4:77101661..77103722,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17001354	1.00[AMR][1000 genomes]
rs17001355	1.00[AMR][1000 genomes]
rs17001359	1.00[AMR][1000 genomes]
rs17001362	1.00[AMR][1000 genomes]
rs17001366	1.00[AMR][1000 genomes]
rs17001367	1.00[AMR][1000 genomes]
rs17001596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001619	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001626	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001627	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001639	1.00[AMR][1000 genomes]
rs41457447	1.00[AMR][1000 genomes]
rs4487370	1.00[AMR][1000 genomes]
rs55998455	1.00[AMR][1000 genomes]
rs56252973	1.00[AMR][1000 genomes]
rs56350100	1.00[AMR][1000 genomes]
rs56653729	1.00[AMR][1000 genomes]
rs57005804	1.00[AMR][1000 genomes]
rs57415085	1.00[AMR][1000 genomes]
rs58605269	1.00[AMR][1000 genomes]
rs60337837	1.00[AMR][1000 genomes]
rs60367545	1.00[AMR][1000 genomes]
rs60885790	1.00[AMR][1000 genomes]
rs61253655	1.00[AMR][1000 genomes]
rs61347786	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61606865	1.00[AMR][1000 genomes]
rs73825715	1.00[AMR][1000 genomes]
rs73825720	1.00[AMR][1000 genomes]
rs73825882	1.00[AMR][1000 genomes]
rs73826307	1.00[AMR][1000 genomes]
rs73826308	1.00[AMR][1000 genomes]
rs73826312	1.00[AMR][1000 genomes]
rs73826315	1.00[AMR][1000 genomes]
rs73826333	1.00[AMR][1000 genomes]
rs73826378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661525	1.00[AMR][1000 genomes]
rs7685216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470047	chr4:77033590-77096777	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv594693	chr4:77033590-77101068	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1008318	chr4:77042356-77095658	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv537144	chr4:77042356-77095658	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1000539	chr4:77042356-77105492	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1000178	chr4:77053046-77113080	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77070400-77093400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:77070600-77113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:77070800-77088400	Weak transcription	Stomach Mucosa	stomach
4	chr4:77070800-77093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:77071000-77086800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:77071000-77087200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:77071200-77087800	Weak transcription	HepG2	liver
8	chr4:77071200-77113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:77071600-77088600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:77077400-77089000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:77077800-77089800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:77078000-77089200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:77078200-77100600	Weak transcription	K562	blood
14	chr4:77078400-77087000	Weak transcription	NHEK	skin
15	chr4:77078600-77100800	Strong transcription	Placenta	Placenta
16	chr4:77079200-77089400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:77079200-77098000	Strong transcription	Fetal Muscle Leg	muscle
18	chr4:77079200-77100800	Strong transcription	Liver	Liver
19	chr4:77079400-77087000	Strong transcription	Brain Hippocampus Middle	brain
20	chr4:77079400-77087400	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr4:77079400-77097200	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr4:77079400-77098800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:77079400-77100000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr4:77079400-77100800	Strong transcription	Fetal Intestine Large	intestine
25	chr4:77079400-77101400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr4:77079400-77108200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:77079600-77085400	Strong transcription	HSMM	muscle
28	chr4:77079600-77088200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:77079600-77091000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:77079600-77098800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:77079600-77099000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr4:77079600-77101200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr4:77079600-77101400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:77079800-77098000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:77079800-77101000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr4:77080000-77091600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr4:77080200-77085400	Strong transcription	Brain Anterior Caudate	brain
38	chr4:77080400-77091400	Strong transcription	Osteobl	bone
39	chr4:77080400-77098400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:77080600-77113600	Weak transcription	Thymus	Thymus
41	chr4:77080800-77085400	Strong transcription	Fetal Lung	lung
42	chr4:77080800-77099000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:77080800-77101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:77080800-77101200	Strong transcription	NHDF-Ad	bronchial
45	chr4:77081000-77085200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:77081000-77085200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:77081000-77097000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:77081000-77097400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:77081000-77097400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:77081400-77085200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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