Variant report

Variant	rs73826307
Chromosome Location	chr4:77012538-77012539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:77012084-77012541	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr4:77012017-77012640	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr4:77012133-77012647	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr4:77012159-77012602	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr4:77011306-77012578	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr4:77012133-77012653	MCF10A-Er-Src	breast:	n/a	n/a
7	E2F4	chr4:77012202-77012577	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr4:77012097-77012577	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr4:77012067-77012608	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr4:77012003-77012565	MCF10A-Er-Src	breast:	n/a	n/a
11	EP300	chr4:77011162-77012559	SK-N-SH	brain:	n/a	chr4:77011456-77011470 chr4:77011562-77011571
12	MYC	chr4:77012163-77012646	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:77006287..77011420-chr4:77011515..77015802,5	K562	blood:
2	chr4:77012326..77015299-chr4:77068893..77071066,2	K562	blood:
3	chr4:76909511..76914243-chr4:77012216..77015645,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265931	TF binding region
ENSG00000138750	Chromatin interaction
ENSG00000198301	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17001246	1.00[AMR][1000 genomes]
rs17001265	1.00[AMR][1000 genomes]
rs17001277	1.00[AMR][1000 genomes]
rs17001289	1.00[AMR][1000 genomes]
rs17001354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001355	1.00[AMR][1000 genomes]
rs17001359	1.00[AMR][1000 genomes]
rs17001362	1.00[AMR][1000 genomes]
rs17001366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001596	1.00[AMR][1000 genomes]
rs17001619	1.00[AMR][1000 genomes]
rs17001626	1.00[AMR][1000 genomes]
rs17001627	1.00[AMR][1000 genomes]
rs17001636	1.00[AMR][1000 genomes]
rs17001639	1.00[AMR][1000 genomes]
rs41457447	1.00[AMR][1000 genomes]
rs4382064	1.00[AMR][1000 genomes]
rs4487370	1.00[AMR][1000 genomes]
rs55998455	1.00[AMR][1000 genomes]
rs56252973	1.00[AMR][1000 genomes]
rs56350100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56653729	1.00[AMR][1000 genomes]
rs57005804	1.00[AMR][1000 genomes]
rs57415085	1.00[AMR][1000 genomes]
rs58605269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60337837	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60367545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60885790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61253655	1.00[AMR][1000 genomes]
rs61347786	1.00[AMR][1000 genomes]
rs61606865	1.00[AMR][1000 genomes]
rs62639704	1.00[AMR][1000 genomes]
rs73825715	1.00[AMR][1000 genomes]
rs73825720	1.00[AMR][1000 genomes]
rs73825882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826333	1.00[AMR][1000 genomes]
rs73826378	1.00[AMR][1000 genomes]
rs73826380	1.00[AMR][1000 genomes]
rs73826385	1.00[AMR][1000 genomes]
rs73826388	1.00[AMR][1000 genomes]
rs7661525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7685216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77008400-77014200	Weak transcription	Pancreas	Pancrea
2	chr4:77008600-77016800	Weak transcription	Psoas Muscle	Psoas
3	chr4:77010400-77012800	Enhancers	Hela-S3	cervix
4	chr4:77011200-77012600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:77011200-77012800	Enhancers	HMEC	breast
6	chr4:77011400-77012600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:77011600-77012600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:77011600-77012800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:77011800-77012600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:77011800-77012600	Enhancers	K562	blood
11	chr4:77012200-77012800	Enhancers	NHEK	skin
12	chr4:77012400-77015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:77012400-77015600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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