Variant report

Variant	rs73935273
Chromosome Location	chr19:53702500-53702501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53700585..53702772-chr19:53706802..53709941,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28713518	1.00[AFR][1000 genomes]
rs73935279	1.00[AFR][1000 genomes]
rs73935281	1.00[AFR][1000 genomes]
rs73935285	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065143	chr19:53507142-53853363	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv544063	chr19:53507142-53853363	ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1058019	chr19:53507142-53904508	ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv544064	chr19:53507142-53904508	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv912342	chr19:53581151-54010759	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1063630	chr19:53591444-54419183	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	282 gene(s)	inside rSNPs	diseases
7	nsv1055378	chr19:53603268-53951855	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv544065	chr19:53603268-53951855	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
9	nsv912351	chr19:53655493-53702508	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2762999	chr19:53665818-53709353	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1065473	chr19:53680455-53709341	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2830362	chr19:53681132-53933147	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv458761	chr19:53682042-53705554	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv458763	chr19:53682042-53705554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv458764	chr19:53682042-53705554	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv458765	chr19:53682042-53705554	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv458766	chr19:53682042-53705554	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv580078	chr19:53682042-53705554	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1060349	chr19:53682042-53709341	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53700800-53702600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
2	chr19:53700800-53704000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
3	chr19:53700800-53708200	Weak transcription	Fetal Heart	heart
4	chr19:53700800-53709200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:53701000-53703600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:53701000-53704200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr19:53701000-53708800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:53701000-53709000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:53701000-53709200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr19:53701000-53709600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:53701000-53710000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:53701200-53703000	Weak transcription	Right Ventricle	heart
13	chr19:53701200-53704600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr19:53701200-53705000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr19:53701200-53709600	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr19:53701200-53713200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:53701400-53703400	Weak transcription	Brain Substantia Nigra	brain
18	chr19:53701400-53703400	Weak transcription	Esophagus	oesophagus
19	chr19:53701400-53703400	Weak transcription	Left Ventricle	heart
20	chr19:53701400-53703400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr19:53701400-53703600	Weak transcription	Fetal Muscle Leg	muscle
22	chr19:53701400-53703600	Weak transcription	Thymus	Thymus
23	chr19:53701400-53704200	Weak transcription	Colon Smooth Muscle	Colon
24	chr19:53701400-53704400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr19:53701400-53704400	Weak transcription	NHDF-Ad	bronchial
26	chr19:53701400-53706600	Weak transcription	Fetal Kidney	kidney
27	chr19:53701400-53706600	Weak transcription	Psoas Muscle	Psoas
28	chr19:53701400-53706800	Weak transcription	Fetal Brain Male	brain
29	chr19:53701400-53707000	Weak transcription	Brain Germinal Matrix	brain
30	chr19:53701400-53708200	Weak transcription	Fetal Brain Female	brain
31	chr19:53701400-53709600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr19:53701400-53710200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr19:53701400-53715200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
34	chr19:53701600-53703000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
35	chr19:53701600-53703400	Weak transcription	Fetal Stomach	stomach
36	chr19:53701600-53703400	Weak transcription	Pancreas	Pancrea
37	chr19:53701600-53703600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr19:53701600-53709200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:53701600-53710200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr19:53701600-53715400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr19:53701600-53720200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr19:53701600-53724800	ZNF genes & repeats	Liver	Liver
43	chr19:53701600-53725000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr19:53701600-53725000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr19:53701800-53703000	Weak transcription	Ovary	ovary
46	chr19:53701800-53703400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr19:53701800-53703400	Weak transcription	Gastric	stomach
48	chr19:53701800-53703600	Weak transcription	Dnd41	blood
49	chr19:53701800-53704200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr19:53701800-53709000	ZNF genes & repeats	Primary T cells from cord blood	blood

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