Variant report

Variant	rs73936032
Chromosome Location	chr19:43001091-43001092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10518265	1.00[EUR][1000 genomes]
rs16975748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975848	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975958	1.00[EUR][1000 genomes]
rs1903724	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34044249	1.00[EUR][1000 genomes]
rs34097578	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34147019	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34366776	1.00[EUR][1000 genomes]
rs34381435	1.00[EUR][1000 genomes]
rs34637823	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34734442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34760209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34923099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35002034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35038065	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35135831	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35213872	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35266309	1.00[EUR][1000 genomes]
rs35312827	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35349390	1.00[EUR][1000 genomes]
rs35409716	0.89[AMR][1000 genomes]
rs35544765	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35855384	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35917849	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35969273	1.00[EUR][1000 genomes]
rs3745238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4635443	1.00[EUR][1000 genomes]
rs55697425	1.00[EUR][1000 genomes]
rs56271304	1.00[EUR][1000 genomes]
rs56312460	1.00[EUR][1000 genomes]
rs57516100	1.00[EUR][1000 genomes]
rs58405647	1.00[EUR][1000 genomes]
rs58845793	1.00[EUR][1000 genomes]
rs59983776	1.00[EUR][1000 genomes]
rs60389892	1.00[EUR][1000 genomes]
rs60993923	1.00[EUR][1000 genomes]
rs61661961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7253354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932713	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73932727	1.00[EUR][1000 genomes]
rs73932730	1.00[EUR][1000 genomes]
rs73932732	1.00[EUR][1000 genomes]
rs73932734	1.00[EUR][1000 genomes]
rs73932736	1.00[EUR][1000 genomes]
rs73932737	1.00[EUR][1000 genomes]
rs73932738	1.00[EUR][1000 genomes]
rs73932739	1.00[EUR][1000 genomes]
rs73932741	1.00[EUR][1000 genomes]
rs73932742	1.00[EUR][1000 genomes]
rs73932744	1.00[EUR][1000 genomes]
rs73932746	1.00[EUR][1000 genomes]
rs73932747	1.00[EUR][1000 genomes]
rs73932748	1.00[EUR][1000 genomes]
rs73932750	1.00[EUR][1000 genomes]
rs73932751	1.00[EUR][1000 genomes]
rs73932752	1.00[EUR][1000 genomes]
rs73932754	1.00[EUR][1000 genomes]
rs73932761	1.00[EUR][1000 genomes]
rs73932762	1.00[EUR][1000 genomes]
rs73936020	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936031	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8105476	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8109269	1.00[EUR][1000 genomes]
rs8110316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42981200-43002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:42993000-43001400	Enhancers	HepG2	liver
3	chr19:42997000-43003800	Enhancers	Fetal Intestine Small	intestine
4	chr19:42998000-43004800	Enhancers	Fetal Intestine Large	intestine
5	chr19:42998200-43001400	Enhancers	GM12878-XiMat	blood
6	chr19:42998200-43002000	Enhancers	Liver	Liver
7	chr19:42999600-43003400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:43000000-43001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr19:43000000-43003000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr19:43000200-43001200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:43000200-43001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:43000200-43002000	Weak transcription	Spleen	Spleen
13	chr19:43000400-43001200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr19:43000400-43003000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr19:43000400-43003000	Enhancers	Primary B cells from peripheral blood	blood
16	chr19:43000600-43001800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr19:43000600-43002000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr19:43000600-43002600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr19:43000600-43003600	Enhancers	Fetal Kidney	kidney
20	chr19:43000600-43003800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:43000800-43001600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr19:43000800-43001600	Enhancers	A549	lung
23	chr19:43000800-43002000	Enhancers	Duodenum Mucosa	Duodenum
24	chr19:43000800-43003000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:43000800-43003200	Enhancers	Primary B cells from cord blood	blood
26	chr19:43000800-43003400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr19:43000800-43003400	Enhancers	Small Intestine	intestine
28	chr19:43001000-43001200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:43001000-43001200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:43001000-43001200	Enhancers	Left Ventricle	heart
31	chr19:43001000-43001200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr19:43001000-43002000	Weak transcription	Placenta	Placenta
33	chr19:43001000-43002800	Enhancers	Adipose Nuclei	Adipose
34	chr19:43001000-43003200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr19:43001000-43003600	Enhancers	Brain Hippocampus Middle	brain

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