Variant report

Variant	rs4635443
Chromosome Location	chr9:15442542-15442543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10518265	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880268	1.00[EUR][1000 genomes]
rs11880269	1.00[EUR][1000 genomes]
rs11881427	1.00[EUR][1000 genomes]
rs16975748	1.00[EUR][1000 genomes]
rs16975813	1.00[EUR][1000 genomes]
rs16975816	1.00[EUR][1000 genomes]
rs16975848	1.00[EUR][1000 genomes]
rs16975958	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903724	1.00[EUR][1000 genomes]
rs34044249	1.00[EUR][1000 genomes]
rs34097578	1.00[EUR][1000 genomes]
rs34147019	1.00[EUR][1000 genomes]
rs34366776	1.00[EUR][1000 genomes]
rs34381435	1.00[EUR][1000 genomes]
rs34637823	1.00[EUR][1000 genomes]
rs34734442	1.00[EUR][1000 genomes]
rs34760209	1.00[EUR][1000 genomes]
rs34923099	1.00[EUR][1000 genomes]
rs35002034	1.00[EUR][1000 genomes]
rs35038065	1.00[EUR][1000 genomes]
rs35135831	1.00[EUR][1000 genomes]
rs35213872	1.00[EUR][1000 genomes]
rs35266309	1.00[EUR][1000 genomes]
rs35312827	1.00[EUR][1000 genomes]
rs35349390	1.00[EUR][1000 genomes]
rs35544765	1.00[EUR][1000 genomes]
rs35855384	1.00[EUR][1000 genomes]
rs35917849	1.00[EUR][1000 genomes]
rs35969273	1.00[EUR][1000 genomes]
rs3745238	1.00[EUR][1000 genomes]
rs55697425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56271304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56312460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57516100	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58405647	1.00[EUR][1000 genomes]
rs58558964	1.00[EUR][1000 genomes]
rs58845793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59983776	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60993923	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61661961	1.00[EUR][1000 genomes]
rs7253354	1.00[EUR][1000 genomes]
rs7253889	1.00[EUR][1000 genomes]
rs7254773	1.00[EUR][1000 genomes]
rs73932713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932727	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932730	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932732	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932734	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932738	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932739	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932741	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932746	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932748	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932751	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932752	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932761	1.00[EUR][1000 genomes]
rs73932762	1.00[EUR][1000 genomes]
rs73936020	1.00[EUR][1000 genomes]
rs73936024	1.00[EUR][1000 genomes]
rs73936031	1.00[EUR][1000 genomes]
rs73936032	1.00[EUR][1000 genomes]
rs8103670	1.00[EUR][1000 genomes]
rs8105476	1.00[EUR][1000 genomes]
rs8107421	1.00[EUR][1000 genomes]
rs8109269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8110316	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1030287	chr9:15332709-15458001	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv831520	chr9:15404866-15444447	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15424000-15443400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:15424000-15443600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:15426400-15442800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:15426400-15443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:15426400-15443600	Weak transcription	Gastric	stomach
6	chr9:15426400-15468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:15426600-15443400	Weak transcription	Fetal Heart	heart
8	chr9:15427000-15443400	Weak transcription	NHEK	skin
9	chr9:15431400-15442800	Weak transcription	Brain Angular Gyrus	brain
10	chr9:15431400-15443400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:15431400-15443400	Weak transcription	Pancreas	Pancrea
12	chr9:15431400-15443600	Weak transcription	Aorta	Aorta
13	chr9:15431400-15443600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:15431400-15443600	Weak transcription	Esophagus	oesophagus
15	chr9:15431400-15445800	Weak transcription	Right Ventricle	heart
16	chr9:15431400-15446000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:15431400-15447800	Weak transcription	Psoas Muscle	Psoas
18	chr9:15431600-15443400	Weak transcription	Stomach Mucosa	stomach
19	chr9:15432200-15443600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:15434000-15464000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:15434400-15443400	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:15434400-15443600	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:15434400-15443600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:15434400-15443600	Weak transcription	K562	blood
26	chr9:15434400-15443800	Weak transcription	HSMMtube	muscle
27	chr9:15434800-15442600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:15434800-15443600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:15434800-15443600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:15435000-15443200	Weak transcription	Brain Anterior Caudate	brain
31	chr9:15435000-15443400	Weak transcription	Fetal Brain Male	brain
32	chr9:15435000-15443400	Weak transcription	Ovary	ovary
33	chr9:15435000-15443600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:15435000-15443600	Weak transcription	Left Ventricle	heart
35	chr9:15435000-15444400	Weak transcription	Brain Substantia Nigra	brain
36	chr9:15435200-15443200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:15435200-15443200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:15435200-15443200	Weak transcription	Colonic Mucosa	Colon
39	chr9:15435200-15443200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:15435200-15443400	Weak transcription	NHLF	lung
41	chr9:15435200-15443600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr9:15435200-15443600	Weak transcription	HMEC	breast
43	chr9:15435200-15443600	Weak transcription	NHDF-Ad	bronchial
44	chr9:15435400-15443200	Weak transcription	NH-A	brain
45	chr9:15435400-15443600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:15435400-15443800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:15436400-15443400	Weak transcription	HUVEC	blood vessel
48	chr9:15436600-15443200	Weak transcription	Placenta	Placenta
49	chr9:15436600-15443600	Weak transcription	A549	lung
50	chr9:15438000-15446400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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