Variant report

Variant	rs74012203
Chromosome Location	chr15:41388768-41388769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41384971..41389195-chr15:41407627..41410447,4	MCF-7	breast:
2	chr15:41388020..41390130-chr15:41405775..41409320,4	K562	blood:

Variant related genes	Relation type
ENSG00000128908	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16971507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927057	0.85[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs56088876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs566929	0.85[AMR][1000 genomes]
rs58451492	1.00[AMR][1000 genomes]
rs58952535	1.00[AMR][1000 genomes]
rs59371712	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691160	1.00[AMR][1000 genomes]
rs7162972	1.00[AMR][1000 genomes]
rs7172558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172580	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014742	0.83[AFR][1000 genomes]
rs74014744	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014747	0.85[AMR][1000 genomes]
rs74014749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8026099	1.00[AMR][1000 genomes]
rs8027150	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41334600-41389000	Strong transcription	Primary T helper cells PMA-I stimulated	--
2	chr15:41341600-41389000	Strong transcription	Liver	Liver
3	chr15:41354200-41389200	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:41354600-41388800	Strong transcription	Fetal Intestine Large	intestine
5	chr15:41354600-41389000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr15:41354800-41389200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:41355000-41389400	Strong transcription	Placenta	Placenta
8	chr15:41355000-41392000	Strong transcription	Fetal Thymus	thymus
9	chr15:41355000-41392400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:41355000-41393800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:41355200-41388800	Strong transcription	Primary T cells from cord blood	blood
12	chr15:41355400-41388800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:41355400-41389200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:41355400-41390200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:41355400-41393200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:41355600-41390800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:41355800-41389200	Strong transcription	Dnd41	blood
18	chr15:41355800-41391000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:41356600-41389000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:41356800-41391000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:41356800-41392200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:41358000-41393600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:41358200-41392000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:41359600-41388800	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:41360400-41389200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:41361200-41407200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:41365200-41391000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:41365400-41389800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr15:41368000-41388800	Strong transcription	HepG2	liver
30	chr15:41369000-41391800	Weak transcription	Right Atrium	heart
31	chr15:41369600-41389000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:41370800-41390800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr15:41371800-41390800	Weak transcription	Stomach Mucosa	stomach
34	chr15:41372800-41392400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:41373200-41389800	Strong transcription	Primary B cells from cord blood	blood
36	chr15:41373800-41388800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:41375800-41389800	Strong transcription	HSMM	muscle
38	chr15:41378000-41397600	Weak transcription	Small Intestine	intestine
39	chr15:41378600-41388800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:41379200-41388800	Strong transcription	Fetal Muscle Leg	muscle
41	chr15:41379200-41389200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr15:41380400-41393400	Strong transcription	Fetal Intestine Small	intestine
43	chr15:41381400-41389000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:41381400-41389200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:41381800-41388800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:41382000-41389000	Strong transcription	HMEC	breast
47	chr15:41382400-41388800	Strong transcription	NH-A	brain
48	chr15:41382600-41389200	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:41383200-41406800	Weak transcription	A549	lung
50	chr15:41383600-41388800	Strong transcription	NHLF	lung

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