Variant report

Variant	rs8027150
Chromosome Location	chr15:41407443-41407444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41406758..41409601-chr15:41707795..41710639,2	MCF-7	breast:
2	chr15:41406937..41409542-chr15:41521164..41524731,5	K562	blood:
3	chr15:41407191..41409421-chr15:41835564..41837898,2	MCF-7	breast:
4	chr15:41406745..41409392-chr15:41623521..41626579,5	K562	blood:
5	chr15:41056057..41058777-chr15:41406413..41409021,2	K562	blood:
6	chr15:41220723..41224054-chr15:41407218..41409948,5	K562	blood:
7	chr15:41056057..41057921-chr15:41407305..41409021,2	K562	blood:
8	chr15:40875804..40877878-chr15:41405943..41408049,2	K562	blood:
9	chr15:41220723..41224054-chr15:41406979..41409349,3	K562	blood:
10	chr15:41407188..41409566-chr15:41523202..41527124,5	K562	blood:
11	chr15:41406809..41409126-chr15:41623521..41625356,3	K562	blood:
12	chr15:41198680..41200257-chr15:41407183..41410024,3	MCF-7	breast:
13	chr15:41396638..41398634-chr15:41406036..41407580,2	K562	blood:
14	chr15:41407358..41408983-chr15:41521863..41524451,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178997	Chromatin interaction
ENSG00000187446	Chromatin interaction
ENSG00000104147	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000137804	Chromatin interaction
ENSG00000251161	Chromatin interaction
ENSG00000137880	Chromatin interaction
ENSG00000137815	Chromatin interaction
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16971507	1.00[AMR][1000 genomes]
rs28505814	1.00[AMR][1000 genomes]
rs2927057	0.85[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs56088876	1.00[AMR][1000 genomes]
rs566929	0.85[AMR][1000 genomes]
rs58451492	1.00[AMR][1000 genomes]
rs58952535	1.00[AMR][1000 genomes]
rs59371712	1.00[AMR][1000 genomes]
rs691160	1.00[AMR][1000 genomes]
rs7162972	1.00[AMR][1000 genomes]
rs7172558	1.00[AMR][1000 genomes]
rs7172580	1.00[AMR][1000 genomes]
rs7173284	1.00[AMR][1000 genomes]
rs74012203	1.00[AMR][1000 genomes]
rs74012218	1.00[AMR][1000 genomes]
rs74012221	1.00[AMR][1000 genomes]
rs74014744	1.00[AMR][1000 genomes]
rs74014746	1.00[AMR][1000 genomes]
rs74014747	0.85[AMR][1000 genomes]
rs74014749	1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8026099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv3355696	chr15:41407285-41409833	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41405400-41407600	Enhancers	Spleen	Spleen
2	chr15:41406400-41409200	Active TSS	GM12878-XiMat	blood
3	chr15:41406600-41408000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:41406600-41409400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr15:41406800-41407600	Flanking Active TSS	HUVEC	blood vessel
6	chr15:41406800-41407600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr15:41406800-41407800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:41406800-41409000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:41406800-41409000	Active TSS	HMEC	breast
10	chr15:41406800-41409000	Active TSS	K562	blood
11	chr15:41406800-41409200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:41406800-41409200	Active TSS	A549	lung
13	chr15:41406800-41409600	Active TSS	Right Ventricle	heart
14	chr15:41407000-41407600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:41407000-41407600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr15:41407000-41407600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr15:41407000-41407600	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr15:41407000-41407800	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr15:41407000-41407800	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:41407000-41407800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr15:41407000-41407800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr15:41407000-41407800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:41407000-41407800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:41407000-41407800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr15:41407000-41407800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr15:41407000-41408000	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr15:41407000-41409000	Active TSS	Brain Angular Gyrus	brain
28	chr15:41407000-41409000	Active TSS	Brain Cingulate Gyrus	brain
29	chr15:41407000-41409000	Active TSS	Fetal Kidney	kidney
30	chr15:41407000-41409000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr15:41407000-41409000	Active TSS	NH-A	brain
32	chr15:41407000-41409000	Active TSS	NHDF-Ad	bronchial
33	chr15:41407000-41409000	Active TSS	Osteobl	bone
34	chr15:41407000-41409200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:41407000-41409200	Active TSS	Psoas Muscle	Psoas
36	chr15:41407000-41409400	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr15:41407000-41409400	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:41407000-41409600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:41407000-41409600	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr15:41407200-41407600	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr15:41407200-41407600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:41407200-41407600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:41407200-41407600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr15:41407200-41407600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr15:41407200-41407600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr15:41407200-41407600	Active TSS	Fetal Muscle Trunk	muscle
47	chr15:41407200-41407600	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr15:41407200-41407600	Flanking Active TSS	Fetal Stomach	stomach
49	chr15:41407200-41407600	Flanking Active TSS	Fetal Thymus	thymus
50	chr15:41407200-41407600	Flanking Active TSS	Rectal Smooth Muscle	rectum

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