Variant report

Variant	rs74012218
Chromosome Location	chr15:41413619-41413620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41408384..41410023-chr15:41413470..41415589,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128908	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16971507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927057	0.85[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs56088876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs566929	0.85[AMR][1000 genomes]
rs58451492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952535	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59371712	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691160	1.00[AMR][1000 genomes]
rs7162972	1.00[AMR][1000 genomes]
rs7172558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172580	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012221	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014742	0.83[AFR][1000 genomes]
rs74014744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014747	0.85[AMR][1000 genomes]
rs74014749	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8026099	1.00[AMR][1000 genomes]
rs8027150	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41409600-41414800	Weak transcription	HepG2	liver
2	chr15:41409600-41417400	Weak transcription	A549	lung
3	chr15:41409600-41427600	Weak transcription	Hela-S3	cervix

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