Variant report

Variant	rs8026099
Chromosome Location	chr15:41453135-41453136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:41453126-41454332	SK-N-SH	brain:	n/a	chr15:41454099-41454109 chr15:41454101-41454108 chr15:41454099-41454108 chr15:41454090-41454107 chr15:41454101-41454108 chr15:41454101-41454111 chr15:41454101-41454108
2	CEBPB	chr15:41453058-41453384	IMR90	lung:	n/a	chr15:41453260-41453273 chr15:41453136-41453149
3	GATA3	chr15:41453097-41454077	A549	lung:	n/a	n/a
4	TCF12	chr15:41453125-41453695	SK-N-SH	brain:	n/a	n/a
5	FOS	chr15:41453131-41453903	MCF10A-Er-Src	breast:	n/a	chr15:41453618-41453627
6	STAT3	chr15:41452976-41454321	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361
7	STAT3	chr15:41452957-41454323	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361
8	PBX3	chr15:41453116-41454274	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr15:41453106-41453939	SK-N-SH	brain:	n/a	n/a
10	GATA3	chr15:41453054-41454377	SK-N-SH	brain:	n/a	chr15:41454099-41454109 chr15:41454101-41454108 chr15:41454099-41454108 chr15:41454090-41454107 chr15:41454101-41454108 chr15:41454101-41454111 chr15:41454101-41454108
11	STAT3	chr15:41453107-41453428	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361
12	CEBPB	chr15:41453099-41453299	HepG2	liver:	n/a	chr15:41453260-41453273 chr15:41453136-41453149
13	CEBPB	chr15:41453077-41453415	Hela-S3	cervix:	n/a	chr15:41453260-41453273 chr15:41453136-41453149
14	STAT3	chr15:41452999-41453976	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361

Variant related genes	Relation type
FAM92A1P1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16971507	1.00[AMR][1000 genomes]
rs28505814	1.00[AMR][1000 genomes]
rs2927057	0.85[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs56088876	1.00[AMR][1000 genomes]
rs566929	0.85[AMR][1000 genomes]
rs58451492	1.00[AMR][1000 genomes]
rs58952535	1.00[AMR][1000 genomes]
rs59371712	1.00[AMR][1000 genomes]
rs691160	1.00[AMR][1000 genomes]
rs7162972	1.00[AMR][1000 genomes]
rs7172558	1.00[AMR][1000 genomes]
rs7172580	1.00[AMR][1000 genomes]
rs7173284	1.00[AMR][1000 genomes]
rs74012203	1.00[AMR][1000 genomes]
rs74012218	1.00[AMR][1000 genomes]
rs74012221	1.00[AMR][1000 genomes]
rs74014744	1.00[AMR][1000 genomes]
rs74014746	1.00[AMR][1000 genomes]
rs74014747	0.85[AMR][1000 genomes]
rs74014749	1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8027150	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41452600-41454400	Enhancers	Hela-S3	cervix
2	chr15:41452600-41454800	Enhancers	Osteobl	bone
3	chr15:41452600-41455400	Enhancers	NHLF	lung
4	chr15:41452800-41453200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:41453000-41454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:41453000-41454600	Enhancers	A549	lung

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