Variant report

Variant	rs74015330
Chromosome Location	chr15:56185654-56185655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55666442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55770635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56912704	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59981828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015309	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015319	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015320	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015327	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015339	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015348	1.00[AMR][1000 genomes]
rs8031446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56172000-56186200	Weak transcription	Osteobl	bone
2	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
3	chr15:56175200-56186000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:56175400-56186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:56175600-56186200	Weak transcription	NHEK	skin
6	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:56176800-56186800	Weak transcription	NH-A	brain
9	chr15:56181600-56186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56181600-56186600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:56181800-56186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:56181800-56188800	Weak transcription	HMEC	breast
13	chr15:56184400-56186200	Weak transcription	Psoas Muscle	Psoas
14	chr15:56185000-56186600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:56185000-56189600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:56185200-56187800	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr15:56185400-56186200	Weak transcription	HSMM	muscle
18	chr15:56185400-56189600	Enhancers	Hela-S3	cervix
19	chr15:56185600-56186000	Enhancers	A549	lung

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