Variant report

Variant	rs74015331
Chromosome Location	chr15:56194868-56194869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56189708..56191637-chr15:56192609..56194993,2	K562	blood:
2	chr15:56189708..56191734-chr15:56192609..56195384,4	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16976653	0.84[AFR][1000 genomes]
rs55666442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55770635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56912704	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59981828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015309	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015319	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015320	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015339	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015341	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015343	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56195400	Weak transcription	NHLF	lung
6	chr15:56190200-56195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:56190200-56199400	Weak transcription	HSMMtube	muscle
8	chr15:56190200-56201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:56190400-56195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:56190400-56196600	Weak transcription	HMEC	breast
12	chr15:56190400-56199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:56190400-56199200	Weak transcription	NHDF-Ad	bronchial
14	chr15:56190400-56199600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:56190600-56195000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:56190600-56195000	Weak transcription	Osteobl	bone
18	chr15:56190800-56196600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:56190800-56196600	Weak transcription	NHEK	skin
20	chr15:56190800-56199400	Weak transcription	Hela-S3	cervix
21	chr15:56192400-56195000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:56192400-56207800	Weak transcription	Liver	Liver
23	chr15:56192600-56199800	Weak transcription	Psoas Muscle	Psoas
24	chr15:56192600-56200800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:56194400-56195800	Enhancers	NH-A	brain
27	chr15:56194400-56196600	Weak transcription	HSMM	muscle
28	chr15:56194600-56195000	Flanking Active TSS	A549	lung

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