Variant report

Variant	rs74015334
Chromosome Location	chr15:56201994-56201995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16976653	0.84[AFR][1000 genomes]
rs55666442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55770635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56912704	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59981828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015309	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015319	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015320	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015339	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015341	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015343	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:56192400-56207800	Weak transcription	Liver	Liver
8	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:56199200-56203600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56199400-56202600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:56199400-56203800	Flanking Active TSS	A549	lung
12	chr15:56199800-56203600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:56200000-56202200	Enhancers	NH-A	brain
14	chr15:56200000-56202800	Enhancers	Osteobl	bone
15	chr15:56200000-56203200	Enhancers	HSMMtube	muscle
16	chr15:56200200-56202200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:56200200-56202800	Enhancers	NHDF-Ad	bronchial
18	chr15:56200200-56203600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:56200200-56208600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:56200200-56213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:56200400-56202600	Enhancers	Hela-S3	cervix
22	chr15:56200400-56203600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:56200400-56209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:56200600-56202000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:56200600-56202200	Enhancers	NHLF	lung
26	chr15:56200600-56203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:56200800-56202400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr15:56200800-56203000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:56200800-56218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
31	chr15:56201200-56202600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr15:56201200-56217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:56201400-56202000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr15:56201400-56202000	Flanking Active TSS	NHEK	skin
35	chr15:56201400-56203600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:56201600-56202000	Enhancers	HUVEC	blood vessel
37	chr15:56201800-56202000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:56201800-56202000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:56201800-56202000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr15:56201800-56202000	Flanking Active TSS	Psoas Muscle	Psoas
41	chr15:56201800-56202000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr15:56201800-56202000	Flanking Active TSS	HSMM	muscle
43	chr15:56201800-56202200	Flanking Active TSS	HMEC	breast
44	chr15:56201800-56205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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