Variant report

Variant	rs74015706
Chromosome Location	chr15:51984138-51984139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51984067..51985645-chr15:51997291..51999601,2	MCF-7	breast:
2	chr15:51984106..51987260-chr15:51989301..51991929,3	MCF-7	breast:
3	chr15:51978743..51984253-chr15:51984583..51988197,6	MCF-7	breast:
4	chr15:51981798..51984182-chr15:51989191..51992186,3	K562	blood:
5	chr15:51983304..51986110-chr15:51988118..51990669,2	MCF-7	breast:
6	chr15:51971321..51974320-chr15:51980562..51984301,3	K562	blood:

Variant related genes	Relation type
ENSG00000104112	Chromatin interaction
ENSG00000259241	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1870051	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271676	0.82[EUR][1000 genomes]
rs35215200	0.82[EUR][1000 genomes]
rs41286482	0.95[ASN][1000 genomes]
rs41286486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41286488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57316586	0.82[EUR][1000 genomes]
rs58765313	0.82[EUR][1000 genomes]
rs59080385	0.82[EUR][1000 genomes]
rs60221854	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60587737	0.82[ASN][1000 genomes]
rs60738713	0.82[EUR][1000 genomes]
rs61119203	0.82[EUR][1000 genomes]
rs7165299	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165882	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7170848	0.82[EUR][1000 genomes]
rs7174214	0.82[EUR][1000 genomes]
rs7181602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013278	0.82[EUR][1000 genomes]
rs74013287	1.00[AMR][1000 genomes]
rs74015707	1.00[ASN][1000 genomes]
rs9672480	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3312275	chr15:51984095-51984167	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3312276	chr15:51984109-51984171	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-51990800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:51974600-51984200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:51974600-51991000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:51974800-51984600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:51975000-51993200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
11	chr15:51978600-51990600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:51979800-51984400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:51980200-51988000	Strong transcription	Brain Germinal Matrix	brain
14	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
15	chr15:51982400-51984400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:51983200-51984400	Enhancers	K562	blood
18	chr15:51983200-51985400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:51983600-51984200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:51983600-51985000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:51983800-51984600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:51983800-51984600	Enhancers	Primary B cells from peripheral blood	blood
24	chr15:51983800-51985000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:51983800-51985000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr15:51983800-51990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:51984000-51985400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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