Variant report

Variant	rs7165882
Chromosome Location	chr15:51963888-51963889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10220901	0.82[EUR][1000 genomes]
rs16964532	0.89[MKK][hapmap]
rs16964561	0.89[MKK][hapmap]
rs1870051	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271675	0.82[EUR][1000 genomes]
rs2271676	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs35215200	0.82[EUR][1000 genomes]
rs41286482	1.00[ASN][1000 genomes]
rs41286486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41286488	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57316586	0.82[EUR][1000 genomes]
rs58765313	0.82[EUR][1000 genomes]
rs59080385	0.82[EUR][1000 genomes]
rs60221854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60587737	0.87[ASN][1000 genomes]
rs60738713	0.82[EUR][1000 genomes]
rs61119203	0.82[EUR][1000 genomes]
rs7165299	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168082	0.82[EUR][1000 genomes]
rs7170848	0.82[EUR][1000 genomes]
rs7174214	0.82[EUR][1000 genomes]
rs7181602	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013278	0.82[EUR][1000 genomes]
rs74015706	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74015707	0.95[ASN][1000 genomes]
rs9672480	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51960600-51964200	Enhancers	K562	blood
2	chr15:51963200-51964200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr15:51963400-51965000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:51963400-51965200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr15:51963800-51965400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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