Variant report

Variant	rs60221854
Chromosome Location	chr15:51945278-51945279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51913792..51916405-chr15:51942869..51945366,3	K562	blood:
2	chr15:51942270..51945778-chr15:52064444..52070724,6	MCF-7	breast:
3	chr15:51944446..51946253-chr15:52042557..52044525,2	K562	blood:
4	chr15:51943708..51945946-chr15:52042057..52044525,3	K562	blood:

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10220901	0.82[EUR][1000 genomes]
rs1870051	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271675	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2271676	0.82[EUR][1000 genomes]
rs2606135	1.00[AFR][1000 genomes]
rs35215200	0.82[EUR][1000 genomes]
rs41286482	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41286486	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41286488	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57316586	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58765313	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59080385	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59239326	1.00[AFR][1000 genomes]
rs60587737	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60738713	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61119203	0.82[EUR][1000 genomes]
rs7165299	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168082	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7168740	1.00[AFR][1000 genomes]
rs7170848	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7174214	0.82[EUR][1000 genomes]
rs7181602	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013278	0.82[EUR][1000 genomes]
rs74015706	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74015707	0.95[ASN][1000 genomes]
rs9672480	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51944800-51945800	Enhancers	K562	blood

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