Variant report

Variant	rs7181602
Chromosome Location	chr15:51969401-51969402
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:51969258-51969824	MCF-7	breast:	n/a	n/a
2	STAT3	chr15:51969281-51969529	MCF10A-Er-Src	breast:	n/a	chr15:51969377-51969385
3	STAT3	chr15:51969296-51969500	MCF10A-Er-Src	breast:	n/a	chr15:51969377-51969385

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51968757..51971365-chr15:51975638..51977391,2	MCF-7	breast:
2	chr15:51969219..51969771-chr17:58041529..58042444,2	MCF-7	breast:

Variant related genes	Relation type
SCG3	TF binding region
ENSG00000267302	Chromatin interaction
ENSG00000189050	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10220901	0.82[EUR][1000 genomes]
rs1870051	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271675	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2271676	0.82[EUR][1000 genomes]
rs2606135	1.00[AFR][1000 genomes]
rs35215200	0.82[EUR][1000 genomes]
rs41286482	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs41286486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41286488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57316586	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58765313	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59080385	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59239326	1.00[AFR][1000 genomes]
rs60221854	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60587737	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60738713	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61119203	0.82[EUR][1000 genomes]
rs7165299	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165882	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7168082	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7168740	1.00[AFR][1000 genomes]
rs7170848	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7174214	0.82[EUR][1000 genomes]
rs74013278	0.82[EUR][1000 genomes]
rs74015706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74015707	1.00[ASN][1000 genomes]
rs9672480	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51965400-51969600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:51965600-51972200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:51966600-51973400	Weak transcription	Right Atrium	heart
4	chr15:51967400-51973000	Weak transcription	K562	blood
5	chr15:51967800-51973000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:51968800-51973400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:51969400-51969600	Enhancers	Brain Cingulate Gyrus	brain
8	chr15:51969400-51970200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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