Variant report

Variant	rs74016356
Chromosome Location	chr16:48296539-48296540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55759468	0.88[AFR][1000 genomes]
rs56379814	0.88[AFR][1000 genomes]
rs74016321	0.88[AFR][1000 genomes]
rs74016322	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48279400-48312600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:48279600-48297200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:48279600-48311200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:48279600-48320200	Weak transcription	Spleen	Spleen
5	chr16:48280400-48309400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr16:48280800-48304000	Weak transcription	Hela-S3	cervix
7	chr16:48281400-48313200	Weak transcription	Right Atrium	heart
8	chr16:48281800-48313200	Weak transcription	Psoas Muscle	Psoas
9	chr16:48282200-48297200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:48285200-48309600	Strong transcription	HepG2	liver
11	chr16:48285800-48297000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr16:48285800-48298600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:48285800-48306800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:48285800-48309600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:48286000-48296800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr16:48286000-48297200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr16:48286000-48297800	Strong transcription	Osteobl	bone
18	chr16:48286000-48300800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:48286000-48300800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr16:48286000-48300800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr16:48286000-48301200	Strong transcription	Dnd41	blood
22	chr16:48286000-48301400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr16:48286000-48301600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr16:48286000-48301600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr16:48286000-48313200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr16:48286200-48297200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr16:48286200-48297200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr16:48286200-48301200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:48286200-48301400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:48286200-48301400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr16:48286600-48297200	Strong transcription	Primary B cells from cord blood	blood
32	chr16:48286600-48298000	Strong transcription	Adipose Nuclei	Adipose
33	chr16:48287200-48302000	Strong transcription	Placenta	Placenta
34	chr16:48287400-48298200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr16:48287400-48320200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:48288200-48296600	Weak transcription	Fetal Thymus	thymus
37	chr16:48288800-48299600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr16:48289400-48309400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr16:48289400-48313200	Weak transcription	Gastric	stomach
40	chr16:48289400-48320400	Weak transcription	Esophagus	oesophagus
41	chr16:48289600-48297000	Weak transcription	Brain Angular Gyrus	brain
42	chr16:48289800-48306800	Weak transcription	Aorta	Aorta
43	chr16:48290600-48297000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr16:48290600-48300400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr16:48290600-48313800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr16:48290800-48303800	Weak transcription	Stomach Mucosa	stomach
47	chr16:48290800-48306000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr16:48291000-48297800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr16:48291400-48297800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr16:48291400-48297800	Strong transcription	Placenta Amnion	Placenta Amnion

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