The 2.0 version of rSNPBase

Variant report

Variant rs55759468
Chromosome Location chr16:48297188-48297189
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48279400-48312600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr16:48279600-48297200 Weak transcription H9 Cell Line embryonic stem cell
3 chr16:48279600-48311200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr16:48279600-48320200 Weak transcription Spleen Spleen
5 chr16:48280400-48309400 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr16:48280800-48304000 Weak transcription Hela-S3 cervix
7 chr16:48281400-48313200 Weak transcription Right Atrium heart
8 chr16:48281800-48313200 Weak transcription Psoas Muscle Psoas
9 chr16:48282200-48297200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr16:48285200-48309600 Strong transcription HepG2 liver
11 chr16:48285800-48298600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
12 chr16:48285800-48306800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr16:48285800-48309600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr16:48286000-48297200 Strong transcription Primary B cells from peripheral blood blood
15 chr16:48286000-48297800 Strong transcription Osteobl bone
16 chr16:48286000-48300800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr16:48286000-48300800 Strong transcription Primary T cells fromperipheralblood blood
18 chr16:48286000-48300800 Strong transcription Primary T helper cells PMA-I stimulated --
19 chr16:48286000-48301200 Strong transcription Dnd41 blood
20 chr16:48286000-48301400 Strong transcription Primary monocytes fromperipheralblood blood
21 chr16:48286000-48301600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
22 chr16:48286000-48301600 Strong transcription Duodenum Mucosa Duodenum
23 chr16:48286000-48313200 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr16:48286200-48297200 Strong transcription Primary hematopoietic stem cells short term culture blood
25 chr16:48286200-48297200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr16:48286200-48301200 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr16:48286200-48301400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr16:48286200-48301400 Strong transcription Duodenum Smooth Muscle Duodenum
29 chr16:48286600-48297200 Strong transcription Primary B cells from cord blood blood
30 chr16:48286600-48298000 Strong transcription Adipose Nuclei Adipose
31 chr16:48287200-48302000 Strong transcription Placenta Placenta
32 chr16:48287400-48298200 Strong transcription Primary neutrophils fromperipheralblood blood
33 chr16:48287400-48320200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr16:48288800-48299600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr16:48289400-48309400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr16:48289400-48313200 Weak transcription Gastric stomach
37 chr16:48289400-48320400 Weak transcription Esophagus oesophagus
38 chr16:48289800-48306800 Weak transcription Aorta Aorta
39 chr16:48290600-48300400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr16:48290600-48313800 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr16:48290800-48303800 Weak transcription Stomach Mucosa stomach
42 chr16:48290800-48306000 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr16:48291000-48297800 Strong transcription Fetal Muscle Trunk muscle
44 chr16:48291400-48297800 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr16:48291400-48297800 Strong transcription Placenta Amnion Placenta Amnion
46 chr16:48291600-48297800 Strong transcription NHEK skin
47 chr16:48291600-48299800 Strong transcription Rectal Mucosa Donor 31 rectum
48 chr16:48291600-48301200 Strong transcription Rectal Mucosa Donor 29 rectum
49 chr16:48291600-48305200 Strong transcription Fetal Adrenal Gland Adrenal Gland
50 chr16:48291600-48309400 Strong transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015