Variant report
| Variant | rs56183549 |
|---|---|
| Chromosome Location | chr16:48280626-48280627 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:48277400-48281400 | Active TSS | GM12878-XiMat | blood |
| 2 | chr16:48278800-48280800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 3 | chr16:48278800-48281800 | Flanking Active TSS | Liver | Liver |
| 4 | chr16:48279000-48287000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 5 | chr16:48279200-48280800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 6 | chr16:48279200-48281600 | Enhancers | Small Intestine | intestine |
| 7 | chr16:48279400-48280800 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 8 | chr16:48279400-48280800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 9 | chr16:48279400-48281000 | Enhancers | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 10 | chr16:48279400-48281200 | Enhancers | Primary mononuclear cells fromperipheralblood | Blood |
| 11 | chr16:48279400-48281600 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
| 12 | chr16:48279400-48281800 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
| 13 | chr16:48279400-48312600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 14 | chr16:48279600-48280800 | Enhancers | Fetal Intestine Large | intestine |
| 15 | chr16:48279600-48280800 | Enhancers | Fetal Intestine Small | intestine |
| 16 | chr16:48279600-48280800 | Enhancers | Fetal Lung | lung |
| 17 | chr16:48279600-48280800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 18 | chr16:48279600-48281000 | Enhancers | Primary T cells fromperipheralblood | blood |
| 19 | chr16:48279600-48281200 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 20 | chr16:48279600-48281200 | Enhancers | Colon Smooth Muscle | Colon |
| 21 | chr16:48279600-48281200 | Weak transcription | Gastric | stomach |
| 22 | chr16:48279600-48281200 | Enhancers | Left Ventricle | heart |
| 23 | chr16:48279600-48281200 | Weak transcription | Pancreas | Pancrea |
| 24 | chr16:48279600-48281400 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
| 25 | chr16:48279600-48281600 | Enhancers | Primary B cells from peripheral blood | blood |
| 26 | chr16:48279600-48281600 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
| 27 | chr16:48279600-48281600 | Enhancers | Brain Substantia Nigra | brain |
| 28 | chr16:48279600-48281800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 29 | chr16:48279600-48281800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 30 | chr16:48279600-48281800 | Enhancers | Brain Angular Gyrus | brain |
| 31 | chr16:48279600-48281800 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 32 | chr16:48279600-48283000 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
| 33 | chr16:48279600-48283600 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
| 34 | chr16:48279600-48285400 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
| 35 | chr16:48279600-48286400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 36 | chr16:48279600-48286600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 37 | chr16:48279600-48286600 | Weak transcription | Fetal Thymus | thymus |
| 38 | chr16:48279600-48287400 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 39 | chr16:48279600-48292200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 40 | chr16:48279600-48292600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 41 | chr16:48279600-48293400 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 42 | chr16:48279600-48293400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 43 | chr16:48279600-48294200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 44 | chr16:48279600-48297200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 45 | chr16:48279600-48311200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 46 | chr16:48279600-48320200 | Weak transcription | Spleen | Spleen |
| 47 | chr16:48279800-48280800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 48 | chr16:48279800-48285600 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
| 49 | chr16:48280000-48281200 | Weak transcription | Aorta | Aorta |
| 50 | chr16:48280000-48283400 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
