Variant report

Variant	rs16946145
Chromosome Location	chr16:48442931-48442932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 215 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs13330237	1.00[AMR][1000 genomes]
rs13339188	1.00[AMR][1000 genomes]
rs16946016	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16946018	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16946020	1.00[AMR][1000 genomes]
rs16946022	1.00[AMR][1000 genomes]
rs16946024	1.00[AMR][1000 genomes]
rs16946028	1.00[AMR][1000 genomes]
rs16946031	1.00[AMR][1000 genomes]
rs16946033	1.00[AMR][1000 genomes]
rs16946035	1.00[AMR][1000 genomes]
rs16946042	1.00[AMR][1000 genomes]
rs16946044	1.00[AMR][1000 genomes]
rs16946046	1.00[AMR][1000 genomes]
rs16946047	1.00[AMR][1000 genomes]
rs16946049	1.00[AMR][1000 genomes]
rs16946050	1.00[AMR][1000 genomes]
rs16946055	1.00[AMR][1000 genomes]
rs16946056	1.00[AMR][1000 genomes]
rs16946077	1.00[AMR][1000 genomes]
rs16946084	1.00[AMR][1000 genomes]
rs16946088	1.00[AMR][1000 genomes]
rs16946097	1.00[AMR][1000 genomes]
rs16946106	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16946113	1.00[AMR][1000 genomes]
rs16946115	1.00[AMR][1000 genomes]
rs16946118	1.00[AMR][1000 genomes]
rs16946120	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16946162	1.00[AMR][1000 genomes]
rs16946199	1.00[AMR][1000 genomes]
rs2046528	1.00[AMR][1000 genomes]
rs2046529	1.00[AMR][1000 genomes]
rs2046530	1.00[AMR][1000 genomes]
rs2160564	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2353650	1.00[AMR][1000 genomes]
rs28387003	1.00[AMR][1000 genomes]
rs28407298	1.00[AMR][1000 genomes]
rs28699264	1.00[AMR][1000 genomes]
rs28722105	1.00[AMR][1000 genomes]
rs34437640	1.00[AMR][1000 genomes]
rs35730749	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs4583238	1.00[AMR][1000 genomes]
rs4619404	1.00[AMR][1000 genomes]
rs55650659	1.00[AMR][1000 genomes]
rs55650780	1.00[AMR][1000 genomes]
rs55727534	1.00[AMR][1000 genomes]
rs55759468	1.00[AMR][1000 genomes]
rs55767683	1.00[AMR][1000 genomes]
rs55791428	1.00[AMR][1000 genomes]
rs55894153	1.00[AMR][1000 genomes]
rs55939380	1.00[AMR][1000 genomes]
rs55945004	1.00[AMR][1000 genomes]
rs56006148	1.00[AMR][1000 genomes]
rs56039807	1.00[AMR][1000 genomes]
rs56056936	1.00[AMR][1000 genomes]
rs56068904	1.00[AMR][1000 genomes]
rs56153325	1.00[AMR][1000 genomes]
rs56183549	1.00[AMR][1000 genomes]
rs56210528	1.00[AMR][1000 genomes]
rs56252717	1.00[AMR][1000 genomes]
rs56270052	1.00[AMR][1000 genomes]
rs56379814	1.00[AMR][1000 genomes]
rs56403551	1.00[AMR][1000 genomes]
rs56739366	1.00[AMR][1000 genomes]
rs57031394	1.00[AMR][1000 genomes]
rs57045758	1.00[AMR][1000 genomes]
rs57276104	1.00[AMR][1000 genomes]
rs57435271	1.00[AMR][1000 genomes]
rs57646139	1.00[AMR][1000 genomes]
rs57760532	1.00[AMR][1000 genomes]
rs57815195	1.00[AMR][1000 genomes]
rs57850865	1.00[AMR][1000 genomes]
rs57858756	1.00[AMR][1000 genomes]
rs58068024	1.00[AMR][1000 genomes]
rs58095119	1.00[AMR][1000 genomes]
rs58315149	1.00[AMR][1000 genomes]
rs58405777	1.00[AMR][1000 genomes]
rs58531648	1.00[AMR][1000 genomes]
rs58909828	1.00[AMR][1000 genomes]
rs58952249	1.00[AMR][1000 genomes]
rs59077393	1.00[AMR][1000 genomes]
rs59103644	1.00[AMR][1000 genomes]
rs59174783	1.00[AMR][1000 genomes]
rs59247940	1.00[AMR][1000 genomes]
rs59295735	1.00[AMR][1000 genomes]
rs59382226	1.00[AMR][1000 genomes]
rs59893238	1.00[AMR][1000 genomes]
rs59966044	1.00[AMR][1000 genomes]
rs60162759	1.00[AMR][1000 genomes]
rs60230358	1.00[AMR][1000 genomes]
rs60461572	1.00[AMR][1000 genomes]
rs60494112	1.00[AMR][1000 genomes]
rs60659794	1.00[AMR][1000 genomes]
rs60731420	1.00[AMR][1000 genomes]
rs60791230	1.00[AMR][1000 genomes]
rs60944057	1.00[AMR][1000 genomes]
rs60962209	1.00[AMR][1000 genomes]
rs60983423	1.00[AMR][1000 genomes]
rs61055548	1.00[AMR][1000 genomes]
rs61173366	1.00[AMR][1000 genomes]
rs61238817	1.00[AMR][1000 genomes]
rs61528456	1.00[AMR][1000 genomes]
rs74016321	1.00[AMR][1000 genomes]
rs74016322	1.00[AMR][1000 genomes]
rs74016323	1.00[AMR][1000 genomes]
rs74016324	1.00[AMR][1000 genomes]
rs74016326	1.00[AMR][1000 genomes]
rs74016331	1.00[AMR][1000 genomes]
rs74016333	1.00[AMR][1000 genomes]
rs74016334	1.00[AMR][1000 genomes]
rs74016335	1.00[AMR][1000 genomes]
rs74016337	1.00[AMR][1000 genomes]
rs74016338	1.00[AMR][1000 genomes]
rs74016339	1.00[AMR][1000 genomes]
rs74016340	1.00[AMR][1000 genomes]
rs74016341	1.00[AMR][1000 genomes]
rs74016342	1.00[AMR][1000 genomes]
rs74016343	1.00[AMR][1000 genomes]
rs74016344	1.00[AMR][1000 genomes]
rs74016345	1.00[AMR][1000 genomes]
rs74016346	1.00[AMR][1000 genomes]
rs74016347	1.00[AMR][1000 genomes]
rs74016348	1.00[AMR][1000 genomes]
rs74016349	1.00[AMR][1000 genomes]
rs74016350	1.00[AMR][1000 genomes]
rs74016351	1.00[AMR][1000 genomes]
rs74016352	1.00[AMR][1000 genomes]
rs74016353	1.00[AMR][1000 genomes]
rs74016355	1.00[AMR][1000 genomes]
rs74016357	1.00[AMR][1000 genomes]
rs74016358	1.00[AMR][1000 genomes]
rs74016362	1.00[AMR][1000 genomes]
rs74016363	1.00[AMR][1000 genomes]
rs74016367	1.00[AMR][1000 genomes]
rs74016372	1.00[AMR][1000 genomes]
rs74016375	1.00[AMR][1000 genomes]
rs74016376	1.00[AMR][1000 genomes]
rs74016377	1.00[AMR][1000 genomes]
rs74016378	1.00[AMR][1000 genomes]
rs74016379	1.00[AMR][1000 genomes]
rs74016381	1.00[AMR][1000 genomes]
rs74016382	1.00[AMR][1000 genomes]
rs74016383	1.00[AMR][1000 genomes]
rs74016384	1.00[AMR][1000 genomes]
rs74016385	1.00[AMR][1000 genomes]
rs74016386	1.00[AMR][1000 genomes]
rs74016387	1.00[AMR][1000 genomes]
rs74016388	1.00[AMR][1000 genomes]
rs74016389	1.00[AMR][1000 genomes]
rs74016390	1.00[AMR][1000 genomes]
rs74016391	1.00[AMR][1000 genomes]
rs74016392	1.00[AMR][1000 genomes]
rs74016393	1.00[AMR][1000 genomes]
rs74016394	1.00[AMR][1000 genomes]
rs74016396	1.00[AMR][1000 genomes]
rs74016397	1.00[AMR][1000 genomes]
rs74016398	1.00[AMR][1000 genomes]
rs74016399	1.00[AMR][1000 genomes]
rs74016400	1.00[AMR][1000 genomes]
rs74016401	1.00[AMR][1000 genomes]
rs74016402	1.00[AMR][1000 genomes]
rs74017903	1.00[AMR][1000 genomes]
rs74017904	1.00[AMR][1000 genomes]
rs74017905	1.00[AMR][1000 genomes]
rs74017907	1.00[AMR][1000 genomes]
rs74017908	1.00[AMR][1000 genomes]
rs74017909	1.00[AMR][1000 genomes]
rs74017910	1.00[AMR][1000 genomes]
rs74017913	1.00[AMR][1000 genomes]
rs74017914	1.00[AMR][1000 genomes]
rs74017917	1.00[AMR][1000 genomes]
rs74017920	1.00[AMR][1000 genomes]
rs74017922	1.00[AMR][1000 genomes]
rs74017923	1.00[AMR][1000 genomes]
rs74017924	1.00[AMR][1000 genomes]
rs74017927	1.00[AMR][1000 genomes]
rs74017928	1.00[AMR][1000 genomes]
rs74017929	1.00[AMR][1000 genomes]
rs74017930	1.00[AMR][1000 genomes]
rs74017931	1.00[AMR][1000 genomes]
rs74017932	1.00[AMR][1000 genomes]
rs74017933	1.00[AMR][1000 genomes]
rs74017934	1.00[AMR][1000 genomes]
rs74017935	1.00[AMR][1000 genomes]
rs74017938	1.00[AMR][1000 genomes]
rs74017943	1.00[AMR][1000 genomes]
rs74017945	1.00[AMR][1000 genomes]
rs74017946	1.00[AMR][1000 genomes]
rs74017947	1.00[AMR][1000 genomes]
rs74017948	1.00[AMR][1000 genomes]
rs74017950	1.00[AMR][1000 genomes]
rs74017951	1.00[AMR][1000 genomes]
rs74017952	1.00[AMR][1000 genomes]
rs74017955	1.00[AMR][1000 genomes]
rs74017956	1.00[AMR][1000 genomes]
rs9925219	1.00[AMR][1000 genomes]
rs9926097	1.00[AMR][1000 genomes]
rs9928523	1.00[AMR][1000 genomes]
rs9937947	1.00[AMR][1000 genomes]
rs9940809	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2758424	chr16:48329437-48479754	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv2758645	chr16:48329437-48479754	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv1837150	chr16:48375777-48470715	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	esv1836876	chr16:48395527-48459558	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv1842331	chr16:48395527-48459558	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv1056931	chr16:48417388-48482594	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv542918	chr16:48417388-48482594	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
13	esv1795074	chr16:48418505-48459558	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	esv1800739	chr16:48418505-48560315	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
15	nsv428658	chr16:48438656-48587750	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48429400-48446000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48439400-48444800	Weak transcription	Small Intestine	intestine
3	chr16:48439800-48443800	Weak transcription	Ovary	ovary
4	chr16:48440800-48443800	Weak transcription	Pancreas	Pancrea
5	chr16:48441600-48444800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:48442000-48443200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr16:48442000-48447200	Enhancers	Placenta	Placenta
8	chr16:48442200-48445000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr16:48442400-48443000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:48442400-48443000	Enhancers	Fetal Muscle Trunk	muscle
11	chr16:48442400-48443200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:48442400-48443200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:48442400-48444600	Enhancers	NH-A	brain
14	chr16:48442400-48444600	Enhancers	Osteobl	bone
15	chr16:48442600-48443000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr16:48442600-48443000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr16:48442600-48443000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr16:48442600-48443200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:48442600-48443200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:48442600-48443200	Enhancers	Adipose Nuclei	Adipose
21	chr16:48442600-48443200	Enhancers	Colonic Mucosa	Colon
22	chr16:48442600-48443200	Enhancers	HSMM	muscle
23	chr16:48442600-48443800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:48442600-48443800	Enhancers	HepG2	liver
25	chr16:48442600-48444000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr16:48442600-48444000	Enhancers	Stomach Mucosa	stomach
27	chr16:48442600-48444000	Enhancers	Hela-S3	cervix
28	chr16:48442600-48444200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr16:48442600-48444600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr16:48442600-48444800	Enhancers	NHLF	lung
31	chr16:48442600-48445600	Enhancers	Fetal Intestine Small	intestine
32	chr16:48442600-48445800	Enhancers	Duodenum Mucosa	Duodenum
33	chr16:48442800-48443000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:48442800-48443000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr16:48442800-48443000	Enhancers	Left Ventricle	heart
36	chr16:48442800-48443000	Enhancers	HSMMtube	muscle
37	chr16:48442800-48443000	Flanking Active TSS	NHDF-Ad	bronchial
38	chr16:48442800-48443000	Enhancers	NHEK	skin
39	chr16:48442800-48443200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:48442800-48443200	Weak transcription	A549	lung
41	chr16:48442800-48443800	Weak transcription	Gastric	stomach
42	chr16:48442800-48443800	Weak transcription	Right Atrium	heart
43	chr16:48442800-48443800	Weak transcription	HMEC	breast
44	chr16:48442800-48445600	Enhancers	Fetal Intestine Large	intestine

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