Variant report

Variant	rs74056671
Chromosome Location	chr14:65600258-65600259
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17093570	1.00[AMR][1000 genomes]
rs59724943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056676	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056679	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65596800-65602600	Enhancers	Fetal Intestine Small	intestine
2	chr14:65597800-65602600	Enhancers	Fetal Intestine Large	intestine
3	chr14:65598200-65601400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:65598200-65601600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:65598200-65602200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr14:65598400-65601400	Weak transcription	HSMM	muscle
7	chr14:65598800-65600800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:65598800-65601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65598800-65604400	Weak transcription	Colonic Mucosa	Colon
10	chr14:65598800-65604400	Weak transcription	Osteobl	bone
11	chr14:65599000-65601800	Weak transcription	NHEK	skin
12	chr14:65599200-65602000	Enhancers	HepG2	liver
13	chr14:65600000-65600800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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