Variant report

Variant	rs74060326
Chromosome Location	chr14:71702963-71702964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10147972	1.00[AMR][1000 genomes]
rs55743997	1.00[AMR][1000 genomes]
rs55818518	1.00[AMR][1000 genomes]
rs56292271	1.00[AMR][1000 genomes]
rs57686599	1.00[AMR][1000 genomes]
rs58545697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58707064	1.00[AFR][1000 genomes]
rs58819721	1.00[AMR][1000 genomes]
rs59076222	1.00[AMR][1000 genomes]
rs59579378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60498679	1.00[AMR][1000 genomes]
rs60733352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060306	1.00[AMR][1000 genomes]
rs74060308	1.00[AMR][1000 genomes]
rs74060312	1.00[AMR][1000 genomes]
rs74060331	1.00[AMR][1000 genomes]
rs74060332	1.00[AMR][1000 genomes]
rs74060340	1.00[AMR][1000 genomes]
rs74060341	1.00[AMR][1000 genomes]
rs74060347	1.00[AMR][1000 genomes]
rs74060349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3398574	chr14:71701024-71703572	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3379326	chr14:71701349-71703347	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71695800-71709400	Weak transcription	Pancreas	Pancrea
2	chr14:71699600-71707400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:71702400-71703200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:71702600-71703000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:71702600-71703000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:71702600-71703000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:71702600-71703000	Enhancers	Esophagus	oesophagus
8	chr14:71702600-71703000	Enhancers	Right Atrium	heart
9	chr14:71702600-71703200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:71702600-71703200	Enhancers	Adipose Nuclei	Adipose
11	chr14:71702600-71703200	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:71702600-71703200	Enhancers	Brain Substantia Nigra	brain
13	chr14:71702600-71703400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr14:71702600-71703400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:71702600-71703400	Enhancers	Fetal Lung	lung
16	chr14:71702600-71703600	Enhancers	Fetal Brain Female	brain
17	chr14:71702600-71703600	Enhancers	Fetal Muscle Leg	muscle
18	chr14:71702600-71703600	Enhancers	Stomach Mucosa	stomach
19	chr14:71702600-71703600	Enhancers	NHEK	skin
20	chr14:71702600-71704000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:71702800-71703000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:71702800-71703000	Enhancers	Brain Angular Gyrus	brain
23	chr14:71702800-71703000	Active TSS	Brain Anterior Caudate	brain
24	chr14:71702800-71703200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:71702800-71703200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:71702800-71703200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr14:71702800-71703200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:71702800-71703200	Active TSS	Brain Germinal Matrix	brain
29	chr14:71702800-71703200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr14:71702800-71703200	Flanking Active TSS	NHDF-Ad	bronchial
31	chr14:71702800-71703400	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr14:71702800-71706800	Weak transcription	Spleen	Spleen

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