Variant report
| Variant | rs74060332 |
|---|---|
| Chromosome Location | chr14:71723938-71723939 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197555 | Chromatin interaction |
| ENSG00000259146 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10147972 | 1.00[AMR][1000 genomes] |
| rs55743997 | 1.00[AMR][1000 genomes] |
| rs55818518 | 1.00[AMR][1000 genomes] |
| rs56292271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57686599 | 1.00[AMR][1000 genomes] |
| rs58545697 | 1.00[AMR][1000 genomes] |
| rs58819721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59076222 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59579378 | 1.00[AMR][1000 genomes] |
| rs60498679 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60733352 | 1.00[AMR][1000 genomes] |
| rs74060306 | 1.00[AMR][1000 genomes] |
| rs74060308 | 1.00[AMR][1000 genomes] |
| rs74060312 | 1.00[AMR][1000 genomes] |
| rs74060326 | 1.00[AMR][1000 genomes] |
| rs74060331 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060340 | 1.00[AMR][1000 genomes] |
| rs74060341 | 1.00[AMR][1000 genomes] |
| rs74060347 | 1.00[AMR][1000 genomes] |
| rs74060349 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041980 | chr14:71196358-71767339 | Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv542125 | chr14:71196358-71767339 | Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044090 | chr14:71496198-71780026 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv832827 | chr14:71676178-71833519 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:71715600-71729000 | Weak transcription | Fetal Heart | heart |
