Variant report

Variant	rs74060340
Chromosome Location	chr14:71745483-71745484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10147972	1.00[AMR][1000 genomes]
rs55743997	1.00[AMR][1000 genomes]
rs55818518	1.00[AMR][1000 genomes]
rs56292271	1.00[AMR][1000 genomes]
rs57686599	1.00[AMR][1000 genomes]
rs58545697	1.00[AMR][1000 genomes]
rs58819721	1.00[AMR][1000 genomes]
rs59076222	1.00[AMR][1000 genomes]
rs59579378	1.00[AMR][1000 genomes]
rs60498679	1.00[AMR][1000 genomes]
rs60733352	1.00[AMR][1000 genomes]
rs74060306	1.00[AMR][1000 genomes]
rs74060308	1.00[AMR][1000 genomes]
rs74060312	1.00[AMR][1000 genomes]
rs74060326	1.00[AMR][1000 genomes]
rs74060331	1.00[AMR][1000 genomes]
rs74060332	1.00[AMR][1000 genomes]
rs74060341	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71743800-71750200	Weak transcription	Thymus	Thymus
2	chr14:71745000-71745600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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